Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001445.1 Corchorus capsularis cultivar CVL-1 contig01445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5956
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32


Found at i:5851 original size:12 final size:12

Alignment explanation


    Indices: 5836--5867  Score: 55
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       5826 AAAACCATGC

                        
       5836 AAAAAAAAAAGA
          1 AAAAAAAAAAGA

                        
       5848 AAAAAAAAAAGA
          1 AAAAAAAAAAGA

                    
       5860 AAAGAAAA
          1 AAA-AAAA

       5868 TGGGGTTGGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  12   15  0.79
  13    4  0.21

ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00


Consensus pattern (12 bp):   
AAAAAAAAAAGA

Found at i:5862 original size:17 final size:16

Alignment explanation


    Indices: 5836--5867  Score: 55
    Period size: 17  Copynumber: 1.9  Consensus size: 16

       5826 AAAACCATGC

                            
       5836 AAAAAAAAAAGAAAAA
          1 AAAAAAAAAAGAAAAA

                            
       5852 AAAAAAGAAAAGAAAA
          1 AAAAAA-AAAAGAAAA

       5868 TGGGGTTGGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    6  0.40
  17    9  0.60

ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00


Consensus pattern (16 bp):   
AAAAAAAAAAGAAAAA
Done.