Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014451.1 Corchorus capsularis cultivar CVL-1 contig14472, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 33859
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:2451 original size:19 final size:18

Alignment explanation


    Indices: 2425--2466  Score: 50
    Period size: 19  Copynumber: 2.3  Consensus size: 18

       2415 AATTAATTAT

                               
       2425 TTTAATATT-TAATTTTTA
          1 TTTAATATTAT-ATTTTTA

                               
       2443 TTTATATATTATATTTTTA
          1 TTTA-ATATTATATTTTTA

            *    
       2462 CTTAA
          1 TTTAA

       2467 AAATTACTCA


Statistics
Matches: 21,  Mismatches: 1, Indels: 4
        0.81            0.04        0.15

Matches are distributed among these distances:
  18    5  0.24
  19   15  0.71
  20    1  0.05

ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64


Consensus pattern (18 bp):   
TTTAATATTATATTTTTA

Found at i:10826 original size:5 final size:5

Alignment explanation


    Indices: 10816--10850  Score: 70
    Period size: 5  Copynumber: 7.0  Consensus size: 5

      10806 ATTAATTGGT

                                                     
      10816 TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA
          1 TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA

      10851 AAACCTTTTG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   30  1.00

ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40


Consensus pattern (5 bp):   
TTCAA

Found at i:25911 original size:2 final size:2

Alignment explanation


    Indices: 25904--25932  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

      25894 TTTTGTGATG

                                                       
      25904 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

      25933 TGAATAGAAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.