Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014453.1 Corchorus capsularis cultivar CVL-1 contig14474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11894
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30


Found at i:11805 original size:17 final size:16

Alignment explanation


    Indices: 11758--11806  Score: 53
    Period size: 16  Copynumber: 2.9  Consensus size: 16

      11748 TTGGAACCAT

                             
      11758 ATGACCCAAAACCAAAA
          1 ATGACCC-AAACCAAAA

             **             
      11775 AACACCCAAACCAAAA
          1 ATGACCCAAACCAAAA

                  *         
      11791 ATGACCTAAATCCAAA
          1 ATGACCCAAA-CCAAA

      11807 TGACCCGATA


Statistics
Matches: 26,  Mismatches: 5, Indels: 2
        0.79            0.15        0.06

Matches are distributed among these distances:
  16   16  0.62
  17   10  0.38

ACGTcount: A:0.57, C:0.31, G:0.04, T:0.08


Consensus pattern (16 bp):   
ATGACCCAAACCAAAA
Done.