Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014454.1 Corchorus capsularis cultivar CVL-1 contig14475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64349

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
242--516
109
2.5
109
91
4
428
47
2
11
38
1.51
1964--1997
2
17.5
2
93
6
61
47
0
0
52
1.00
6110--6141
2
16.0
2
93
0
55
53
0
0
46
1.00
7128--7194
15
4.5
15
80
0
71
28
1
43
26
1.64
7127--7194
3
22.7
3
76
0
55
27
1
42
27
1.64
7146--7192
12
3.9
12
85
0
67
31
2
44
21
1.64
9373--9467
42
2.3
42
84
0
118
15
36
7
40
1.76
24841--24880
13
3.0
13
85
3
53
27
5
37
30
1.78
25408--25523
16
7.1
16
67
12
74
18
41
29
10
1.84
25382--25523
33
4.3
33
90
5
207
19
41
28
11
1.85
25382--25540
66
2.4
66
84
4
214
17
40
30
11
1.85
26310--26397
33
2.7
33
85
3
115
10
32
39
17
1.83
28734--28778
22
2.0
22
83
8
56
53
31
8
6
1.58
33643--33670
4
7.0
4
100
0
56
50
25
0
25
1.50
39724--39764
10
4.3
10
87
9
59
0
34
0
65
0.93
45458--45486
5
5.8
5
100
0
58
82
0
17
0
0.66
46056--46087
2
16.0
2
100
0
64
50
0
0
50
1.00
53632--53669
12
3.3
11
89
10
58
55
2
0
42
1.14

Tables:   1

The End!