Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014455.1 Corchorus capsularis cultivar CVL-1 contig14476, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11526
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Found at i:3519 original size:21 final size:21

Alignment explanation


    Indices: 3495--3543  Score: 89
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       3485 CTCCTTTGGT

                                 
       3495 GCTTCAACTTCGAGGGCTTTG
          1 GCTTCAACTTCGAGGGCTTTG

                        *        
       3516 GCTTCAACTTCGCGGGCTTTG
          1 GCTTCAACTTCGAGGGCTTTG

                   
       3537 GCTTCAA
          1 GCTTCAA

       3544 GTTCAACTTC


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.14, C:0.27, G:0.27, T:0.33


Consensus pattern (21 bp):   
GCTTCAACTTCGAGGGCTTTG

Found at i:3526 original size:27 final size:24

Alignment explanation


    Indices: 3488--3567  Score: 87
    Period size: 27  Copynumber: 3.4  Consensus size: 24

       3478 CCTCTTACTC

                    *           *   
       3488 CTTTGG-TGCTTCAACTTCGAGGG
          1 CTTTGGCTTCTTCAACTTCGCGGG

                                    
       3511 CTTTGG---CTTCAACTTCGCGGG
          1 CTTTGGCTTCTTCAACTTCGCGGG

                                       
       3532 CTTTGGCTTCAAGTTCAACTTCGCGGG
          1 CTTTGGCTTC---TTCAACTTCGCGGG

                     
       3559 CTTTGGCTT
          1 CTTTGGCTT

       3568 TAGCCAGCAT


Statistics
Matches: 50,  Mismatches: 1, Indels: 8
        0.85            0.02        0.14

Matches are distributed among these distances:
  21   20  0.40
  23    6  0.12
  24    1  0.02
  27   23  0.46

ACGTcount: A:0.11, C:0.25, G:0.28, T:0.36


Consensus pattern (24 bp):   
CTTTGGCTTCTTCAACTTCGCGGG
Done.