Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014459.1 Corchorus capsularis cultivar CVL-1 contig14480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194810

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--581
200
2.9
198
87
3
793
33
18
14
33
1.91
1074--1113
13
3.2
13
89
10
57
50
2
0
47
1.14
1074--1102
2
15.0
2
92
7
51
51
0
0
48
1.00
2260--2367
49
2.2
49
96
3
198
57
8
12
22
1.61
2979--3030
22
2.4
21
78
15
61
44
5
15
34
1.70
5685--5745
30
2.0
30
100
0
122
32
9
19
37
1.85
8148--8180
2
17.0
2
93
6
59
51
0
0
48
1.00
13653--13687
4
8.8
4
100
0
70
77
0
22
0
0.78
13816--13856
21
2.0
20
85
4
55
19
4
34
41
1.73
13921--13966
24
1.9
24
86
0
65
26
10
23
39
1.88
14121--14190
17
4.1
17
83
0
95
47
11
4
37
1.59
14818--14852
18
1.9
18
94
0
61
45
11
14
28
1.79
17291--17459
87
1.9
87
95
0
302
35
11
12
40
1.79
33704--33732
11
2.6
11
100
0
58
0
6
6
86
0.72
34071--34168
31
3.2
31
88
0
106
32
27
22
17
1.96
53091--53129
6
6.5
6
87
0
60
58
5
17
17
1.56
53091--53129
12
3.2
12
96
0
69
58
5
17
17
1.56
59863--59889
6
4.5
6
100
0
54
62
0
18
18
1.32
70213--70244
3
10.7
3
100
0
64
68
0
31
0
0.90
88312--88373
32
2.0
32
87
9
92
20
24
22
32
1.98
88554--88613
31
1.9
31
89
0
93
30
5
33
31
1.79
96793--96829
18
2.1
18
100
0
74
29
16
21
32
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100200--100225
8
3.2
8
100
0
52
76
11
0
11
1.01
100716--100822
53
2.0
53
98
0
205
42
11
6
40
1.67
125497--126007
246
2.1
245
84
2
659
19
27
17
35
1.94
125807--126180
195
1.9
195
93
0
640
17
26
17
37
1.93
127882--128080
96
2.0
97
90
5
310
39
16
15
29
1.89
130974--131482
246
2.1
245
85
4
695
20
26
16
36
1.93
131282--131668
195
2.0
195
95
1
695
18
27
16
36
1.93
131060--131901
441
1.9
441
91
2
1388
19
26
16
37
1.93
139604--139630
5
5.4
5
100
0
54
55
44
0
0
0.99
139817--139845
1
29.0
1
100
0
58
0
0
0
100
0.00
146422--146500
21
3.9
21
81
6
92
34
34
17
13
1.90
146449--146500
18
2.9
18
85
0
59
34
34
21
9
1.86
156740--156803
32
2.0
32
100
0
128
37
9
31
21
1.85
160816--161316
177
2.8
176
75
4
472
32
13
16
37
1.88
165042--165079
19
2.1
17
90
9
58
34
2
18
44
1.64
166552--166604
27
2.1
25
83
13
65
15
33
9
41
1.79
176774--176823
26
2.0
25
88
7
75
16
44
6
34
1.72
178894--179140
126
2.0
125
92
0
413
31
19
13
34
1.91
185147--185203
28
2.0
29
86
6
80
28
15
5
50
1.65
185325--185419
37
2.6
37
81
3
120
14
16
11
56
1.66
190103--190129
14
1.9
14
100
0
54
62
7
22
7
1.46
191453--191505
25
2.2
25
83
6
65
39
0
28
32
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
194734--194772
12
3.2
12
85
14
53
82
2
15
0
0.79

Tables:   1

The End!