Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014465.1 Corchorus capsularis cultivar CVL-1 contig14486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 192356
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:23097 original size:249 final size:246
Alignment explanation
Indices: 22674--23156 Score: 700
Period size: 249 Copynumber: 2.0 Consensus size: 246
22664 GCAGCCAAAT
*
22674 AAGGAAGAAGAAGCAGCTAAACTCAAAGAGAATGACTCAGTTGACATATTGAATCGGACTCCTCA
1 AAGGAAGAAGAAGCAGCTAAACTCAAAGAGAATGACTCAGCTGACATATTGAATCGGACTCCTCA
*
22739 ATTTCTGCAGCCGAAGAAGGAAGCAGAAGAAGTTAAAGACAATTCCTTTGCTGGGATATTGAATC
66 ATTTCTGCAGCCGAAGAAGGAAGCAGAAGAAGCTAAAGACAATTCCTTTGCTGGGATATTGAATC
* * * * * *
22804 AGACACCTCCAGAGGGGAAGACGAGTAAGAAATCTGGCCCTTGTAAGATACAGAGAAAAACCCCT
131 AGACACCTCCAGAGGGGAAGACAAGAAAGAAATCTCGCCCTTGTAAAAGACAGAGAAAAACCACT
* * *
22869 TCAGACAAAAGTAATTTCAAAACCAGTTCAGACAAAAGTCTGCAGCCTATC
196 TCAGACAAAAGTAATTGCAAAACCACTTCACACAAAAGTCTGCAGCCTATC
* * *
22920 AAGGAAGAAGCAGCTGCTAAAC-CTAAAGAGAATGACTCAGCTGACTTATTGAATCGGAAAACTC
1 AAGGAAGAAGAAGCAGCTAAACTC-AAAGAGAATGACTCAGCTGACATATTGAATCGG---ACTC
* *
22984 CTCAATTTCTGCAGCCTAAGAAGGAAGCAGAAGAAGCTAAAGACAATTCCTCTT-CTGGGATGTT
62 CTCAATTTCTGCAGCCGAAGAAGGAAGCAGAAGAAGCTAAAGACAATTCCT-TTGCTGGGATATT
* * * * *
23048 GAATCAGACTCCTGCAGAGGGGAAGACAAGAAAGGAATCTCGTCCTTGTAAAAGACTGAGAAAAA
126 GAATCAGACACCTCCAGAGGGGAAGACAAGAAAGAAATCTCGCCCTTGTAAAAGACAGAGAAAAA
* *
23113 CCACTTCAGACAAAAGTGATTGCAAAGCCACTTCACACAAAAGT
191 CCACTTCAGACAAAAGTAATTGCAAAACCACTTCACACAAAAGT
23157 AAGTGCATGC
Statistics
Matches: 209, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
245 1 0.00
246 51 0.24
249 155 0.74
250 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (246 bp):
AAGGAAGAAGAAGCAGCTAAACTCAAAGAGAATGACTCAGCTGACATATTGAATCGGACTCCTCA
ATTTCTGCAGCCGAAGAAGGAAGCAGAAGAAGCTAAAGACAATTCCTTTGCTGGGATATTGAATC
AGACACCTCCAGAGGGGAAGACAAGAAAGAAATCTCGCCCTTGTAAAAGACAGAGAAAAACCACT
TCAGACAAAAGTAATTGCAAAACCACTTCACACAAAAGTCTGCAGCCTATC
Found at i:24935 original size:2 final size:2
Alignment explanation
Indices: 24928--24961 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
24918 ATGTATATTC
24928 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24962 CATGCTTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44942 original size:12 final size:12
Alignment explanation
Indices: 44921--44956 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
44911 ATTAATATTA
*
44921 TATATATATATC
1 TATATCTATATC
44933 TATATCTATATC
1 TATATCTATATC
44945 TATATACTATAT
1 TATAT-CTATAT
44957 TAAAATGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (12 bp):
TATATCTATATC
Found at i:44943 original size:44 final size:38
Alignment explanation
Indices: 44862--44937 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
44852 ACTCAATACA
44862 AGGCAAATTCAATTAATATTATATATATATATCTATAT
1 AGGCAAATTCAATTAATATTATATATATATATCTATAT
44900 AGGCAAATTCAATTAATATTATATATATATATCTATAT
1 AGGCAAATTCAATTAATATTATATATATATATCTATAT
44938 CTATATCTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (38 bp):
AGGCAAATTCAATTAATATTATATATATATATCTATAT
Found at i:45205 original size:78 final size:76
Alignment explanation
Indices: 45054--45282 Score: 344
Period size: 78 Copynumber: 3.1 Consensus size: 76
45044 TTTTATATAG
* * * *
45054 TTTTACTTAACTAAAAACTCTATTTTTATTTAATTAAATATAATATCTTTATAAC---TATTTT-
1 TTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTTATATTTTA
45115 --ATTTTACTA
66 CCATTTTACTA
45124 TTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTATTATATTT
1 TTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAAC--TTATATTT
*
45189 TATCATTTTACTA
64 TACCATTTTACTA
*
45202 TTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATTACTTATATTTTA
1 TTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTTATATTTTA
45267 CCATTTTACTA
66 CCATTTTACTA
45278 TTTTA
1 TTTTA
45283 ATTAAAAAAC
Statistics
Matches: 145, Mismatches: 6, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
70 51 0.35
75 6 0.04
76 25 0.17
78 63 0.43
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (76 bp):
TTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTTATATTTTA
CCATTTTACTA
Found at i:47543 original size:16 final size:17
Alignment explanation
Indices: 47512--47544 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
47502 CCCAAACAAC
47512 ATAAATGGGTCTAAAAA
1 ATAAATGGGTCTAAAAA
47529 ATAAATGGG-CTAAAAA
1 ATAAATGGGTCTAAAAA
47545 GTAACAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.55, C:0.06, G:0.18, T:0.21
Consensus pattern (17 bp):
ATAAATGGGTCTAAAAA
Found at i:48535 original size:21 final size:21
Alignment explanation
Indices: 48510--48551 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
48500 GAACCTTTTA
* *
48510 TTATTGATAGAAAGAGCTACT
1 TTATTGATAAAAAGAACTACT
48531 TTATTGATAAAAAGAACTACT
1 TTATTGATAAAAAGAACTACT
48552 GAAATTACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (21 bp):
TTATTGATAAAAAGAACTACT
Found at i:52246 original size:16 final size:17
Alignment explanation
Indices: 52215--52247 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
52205 CCAAAACAAC
52215 ATAAATGGGTCTAAAAA
1 ATAAATGGGTCTAAAAA
52232 ATAAATGGG-CTAAAAA
1 ATAAATGGGTCTAAAAA
52248 GTAATAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.55, C:0.06, G:0.18, T:0.21
Consensus pattern (17 bp):
ATAAATGGGTCTAAAAA
Found at i:52864 original size:109 final size:110
Alignment explanation
Indices: 52668--52942 Score: 430
Period size: 109 Copynumber: 2.5 Consensus size: 110
52658 ACTATTATAG
* * *
52668 TTTTATTCTACTAGAAACTCTATTTTTATTCAATTAAATTAAATCTAATATCTTTATAATTACTT
1 TTTTATTCTACTAAAAACTC-A-TATT-TTC-ATTTAATTAAATCTAATATCTTTATAATTACTT
* *
52733 TATTTTTACCAAAAAATTTGGATATACTAAAATTTTTTCTAGTATACAA
62 TATTTTTACCAAAAAATTTGGATATACTAAAATTTTTTCTAATATAAAA
52782 TTTTATTCTACTAAAAACTCA-ATTTTCATTTAATTAAATCTAATATCTTTATAATTACTTTATT
1 TTTTATTCTACTAAAAACTCATATTTTCATTTAATTAAATCTAATATCTTTATAATTACTTTATT
*
52846 TTTACCAAAAAATTTGGATATATTAAAATTTTTTCTAATATAAAA
66 TTTACCAAAAAATTTGGATATACTAAAATTTTTTCTAATATAAAA
*
52891 TTTTATTCTACTAAAAACT-ATATTTTCATTTAATTAAATTTAATAT-TTTATA
1 TTTTATTCTACTAAAAACTCATATTTTCATTTAATTAAATCTAATATCTTTATA
52943 TAGTTTTTTT
Statistics
Matches: 153, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
108 7 0.05
109 121 0.79
110 3 0.02
111 2 0.01
113 1 0.01
114 19 0.12
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.49
Consensus pattern (110 bp):
TTTTATTCTACTAAAAACTCATATTTTCATTTAATTAAATCTAATATCTTTATAATTACTTTATT
TTTACCAAAAAATTTGGATATACTAAAATTTTTTCTAATATAAAA
Found at i:54367 original size:23 final size:23
Alignment explanation
Indices: 54337--54382 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
54327 TTGGCTTCCC
54337 TGTACTGGTGCTCCATATTGGTA
1 TGTACTGGTGCTCCATATTGGTA
54360 TGTACTGGTGCTCCATATTGGTA
1 TGTACTGGTGCTCCATATTGGTA
54383 CTGGATAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.26, T:0.39
Consensus pattern (23 bp):
TGTACTGGTGCTCCATATTGGTA
Found at i:55568 original size:4 final size:4
Alignment explanation
Indices: 55561--55586 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
55551 ATATACTAAA
55561 ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT AT
55587 CTACATCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:56632 original size:1 final size:1
Alignment explanation
Indices: 56626--56656 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
56616 GCAGGTTATC
56626 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
56657 GAGAATCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:66214 original size:27 final size:27
Alignment explanation
Indices: 66183--66238 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
66173 ACTCCCTCTG
*
66183 TTCCTTTTTAATTGTCCCTTTCCCTTA
1 TTCCTTTTTAATTGTCCATTTCCCTTA
66210 TTCCTTTTTAATTGTCCATTTCCCTTA
1 TTCCTTTTTAATTGTCCATTTCCCTTA
66237 TT
1 TT
66239 TTCCAGAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.12, C:0.27, G:0.04, T:0.57
Consensus pattern (27 bp):
TTCCTTTTTAATTGTCCATTTCCCTTA
Found at i:69259 original size:18 final size:18
Alignment explanation
Indices: 69223--69261 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
69213 GCTGCTGATT
* *
69223 TTGATTTTGATGTGTTTG
1 TTGATTTTGATGAGCTTG
*
69241 TTGATTTTGCTGAGCTTG
1 TTGATTTTGATGAGCTTG
69259 TTG
1 TTG
69262 GGGTGTTTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.10, C:0.05, G:0.28, T:0.56
Consensus pattern (18 bp):
TTGATTTTGATGAGCTTG
Found at i:72731 original size:18 final size:19
Alignment explanation
Indices: 72695--72733 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
72685 TTTGCACCAT
72695 TTCAAGTCGGTACGATCGG
1 TTCAAGTCGGTACGATCGG
* *
72714 TTCAA-TCGGTTCGGTCGG
1 TTCAAGTCGGTACGATCGG
72732 TT
1 TT
72734 TTTGTCAGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.15, C:0.21, G:0.31, T:0.33
Consensus pattern (19 bp):
TTCAAGTCGGTACGATCGG
Found at i:84530 original size:31 final size:31
Alignment explanation
Indices: 84492--84558 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
84482 ATAGATTTGA
84492 AATTATTTTTATCTTATGGATGATGTAATGG
1 AATTATTTTTATCTTATGGATGATGTAATGG
84523 AATTATTTTTATCTTATGGATGATGTAATGG
1 AATTATTTTTATCTTATGGATGATGTAATGG
84554 AATTA
1 AATTA
84559 AAGAGTAGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.48
Consensus pattern (31 bp):
AATTATTTTTATCTTATGGATGATGTAATGG
Found at i:90541 original size:15 final size:14
Alignment explanation
Indices: 90518--90550 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
90508 AAGAAAGCTC
90518 TTTTTTTCTTTTCT
1 TTTTTTTCTTTTCT
90532 TTTCTTTTCTTTT-T
1 TTT-TTTTCTTTTCT
90546 TTTTT
1 TTTTT
90551 CATGTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 7 0.39
15 9 0.50
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTTTCTTTTCT
Found at i:91547 original size:2 final size:2
Alignment explanation
Indices: 91540--91571 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
91530 ATTGGGGGTT
91540 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91572 GTTTTATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:107671 original size:1 final size:1
Alignment explanation
Indices: 107655--107704 Score: 64
Period size: 1 Copynumber: 50.0 Consensus size: 1
107645 GAAAATGCCC
* * * *
107655 TTTTGTTTTTTGTTTTTTTGTTTTTTGTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
107705 GCATTCCATG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (1 bp):
T
Found at i:107704 original size:15 final size:15
Alignment explanation
Indices: 107655--107701 Score: 80
Period size: 15 Copynumber: 3.3 Consensus size: 15
107645 GAAAATGCCC
107655 TTTTGTTTTTTGTTT
1 TTTTGTTTTTTGTTT
107670 TTTTGTTTTTTGTTT
1 TTTTGTTTTTTGTTT
107685 TTTT-TTTTTT-TTT
1 TTTTGTTTTTTGTTT
107698 TTTT
1 TTTT
107702 TTTGCATTCC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.22
14 6 0.19
15 19 0.59
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (15 bp):
TTTTGTTTTTTGTTT
Found at i:110176 original size:6 final size:6
Alignment explanation
Indices: 110165--110189 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
110155 GAGCTGTGGC
110165 TCCCTT TCCCTT TCCCTT TCCCTT T
1 TCCCTT TCCCTT TCCCTT TCCCTT T
110190 GCAACTGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (6 bp):
TCCCTT
Found at i:116087 original size:24 final size:25
Alignment explanation
Indices: 116039--116087 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
116029 ATGGGATTTT
**
116039 TTGCAGAAAACTTTTTTTTGACAAAG
1 TTGCAGAAAACTTTTTAAT-ACAAAG
116065 TTGCAGAAAACTTTTTAAT-CAAA
1 TTGCAGAAAACTTTTTAATACAAA
116088 TGAGGCTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
26 17 0.81
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (25 bp):
TTGCAGAAAACTTTTTAATACAAAG
Found at i:118361 original size:1 final size:1
Alignment explanation
Indices: 118355--118388 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
118345 GACAGTTATG
118355 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
118389 AATGCTGGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:138497 original size:1 final size:1
Alignment explanation
Indices: 138491--138535 Score: 90
Period size: 1 Copynumber: 45.0 Consensus size: 1
138481 CCTGTGAGTC
138491 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
138536 AATGAGAAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:140950 original size:26 final size:26
Alignment explanation
Indices: 140920--140972 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
140910 TATGATCCGG
140920 TAGGGGCCTCAATTCAAATCCTGGCT
1 TAGGGGCCTCAATTCAAATCCTGGCT
140946 TAGGGGCCTCAATTCAAATCCTGGCT
1 TAGGGGCCTCAATTCAAATCCTGGCT
140972 T
1 T
140973 TTACCATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (26 bp):
TAGGGGCCTCAATTCAAATCCTGGCT
Found at i:141957 original size:214 final size:215
Alignment explanation
Indices: 141624--142142 Score: 648
Period size: 214 Copynumber: 2.4 Consensus size: 215
141614 TATTGCTCAC
* * * * * * *
141624 ACTTTTACGACATTTGCAGAGACATTTTTGTCTAATGTCGTTCAATTATGCGATA-TTTGTCACA
1 ACTTTTGCGACGTTTGCAGAGACATTTTTCTCAAATGTCGTTCAATCATGCGATATTTTTTAACA
* * *
141688 AATGTCGCTTTAAGATAGACTTTTCCGACATTTATAGCAACGTTTTACGGAAACGTCGTTTGA-T
66 AACGTCGCTTTAAGATAGACTTTTCCGACATTTATAGCAACATTTTACCGAAACGTCGTTTGAGT
* * * * * *
141752 AAATGACATTTTAATAAATGTCACAAAATCTTACGACTCTTTTTTAAAATTGAGTGACGTTTTTT
131 AAATGACATGTAAATAAACGTCACAAAACCTTACGACACTTTTTT-AAATTGAATGACGTTTTTT
** *
141817 AATTGCGTCACTCTTGTTTAT
195 AATAACGTCACTCTAGTTTAT
*
141838 ACTTTTGCGACGTTTGCAGAGACA-TTTTCTCCAATGTCGTTCAATCATGCGATATTTTTTAACA
1 ACTTTTGCGACGTTTGCAGAGACATTTTTCTCAAATGTCGTTCAATCATGCGATATTTTTTAACA
* * * * *
141902 AACGTTGCTTTAAGATATACTTTTTCGACATTTATAGCAACATTTTTCCGAAACGTCGTTTTAGT
66 AACGTCGCTTTAAGATAGACTTTTCCGACATTTATAGCAACATTTTACCGAAACGTCGTTTGAGT
* * * ** *
141967 ATATGACGTGTAAATAAACGTCGCATCACCTTGCGACACTTTTTTAAATTGAATGACGTTTTTTA
131 AAATGACATGTAAATAAACGTCACAAAACCTTACGACACTTTTTTAAATTGAATGACGTTTTTTA
*
142032 ATAACGTTACTCTAGTTTAT
196 ATAACGTCACTCTAGTTTAT
** * * * * * *
142052 GTTTTTGCGACGTTTGTAGAGACATTTTTCTTAAACGTCGTTCAATCATGCGACATTTATCAACA
1 ACTTTTGCGACGTTTGCAGAGACATTTTTCTCAAATGTCGTTCAATCATGCGATATTTTTTAACA
142117 AACGTCGCTTTAAGATAGACTTTTCC
66 AACGTCGCTTTAAGATAGACTTTTCC
142143 CATTTTCTTT
Statistics
Matches: 259, Mismatches: 43, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
213 27 0.10
214 140 0.54
215 92 0.36
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (215 bp):
ACTTTTGCGACGTTTGCAGAGACATTTTTCTCAAATGTCGTTCAATCATGCGATATTTTTTAACA
AACGTCGCTTTAAGATAGACTTTTCCGACATTTATAGCAACATTTTACCGAAACGTCGTTTGAGT
AAATGACATGTAAATAAACGTCACAAAACCTTACGACACTTTTTTAAATTGAATGACGTTTTTTA
ATAACGTCACTCTAGTTTAT
Found at i:143354 original size:3 final size:3
Alignment explanation
Indices: 143348--143391 Score: 63
Period size: 3 Copynumber: 14.3 Consensus size: 3
143338 CTTTTAGTAG
143348 TTA TTA TTA TTA TTA TTA TTA TTA TATA TTA TATA TTA -TA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA T-TA TTA TTA TTA T
143392 ACTACTATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:143392 original size:12 final size:11
Alignment explanation
Indices: 143349--143392 Score: 58
Period size: 10 Copynumber: 4.2 Consensus size: 11
143339 TTTTAGTAGT
143349 TATTATTATTA
1 TATTATTATTA
143360 TTATTATTATTA
1 -TATTATTATTA
143372 TA-TATTA-TA
1 TATTATTATTA
143381 TATTA-TATTA
1 TATTATTATTA
143391 TA
1 TA
143393 CTACTATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 6 0.20
10 11 0.37
11 2 0.07
12 11 0.37
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTATTATTA
Found at i:143400 original size:25 final size:25
Alignment explanation
Indices: 143349--143403 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
143339 TTTTAGTAGT
*
143349 TATTATTATTATTATTATTATTATA
1 TATTATTATTATTATTATTACTATA
143374 TATTATATATTA-TATTA-TACTACTA
1 TATTAT-TATTATTATTATTACTA-TA
143399 TATTA
1 TATTA
143404 ACTATATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTATTATTATTATTATTACTATA
Found at i:143676 original size:79 final size:79
Alignment explanation
Indices: 143543--143699 Score: 233
Period size: 79 Copynumber: 2.0 Consensus size: 79
143533 AAATAAAATT
* * * * *
143543 TTATGTTATAAGTTGAAAATATAGGTGTTAAGTAAGATCAAATCGATGCAATTTGACTTTAAATT
1 TTATGTTATAAGTTGAAAATATAGATATCAAGTAAGATCAAATCAATGCAATTTGACTTCAAATT
*
143608 AATCTGAACCCGTA
66 AATATGAACCCGTA
* *
143622 TTATGTTATGAGTTGAAAATATAGATATCAAGTAAGATCAAATCAATGCGATTTGACTTCAAATT
1 TTATGTTATAAGTTGAAAATATAGATATCAAGTAAGATCAAATCAATGCAATTTGACTTCAAATT
*
143687 AGTATGAACCCGT
66 AATATGAACCCGT
143700 GAACATTTAA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
79 69 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (79 bp):
TTATGTTATAAGTTGAAAATATAGATATCAAGTAAGATCAAATCAATGCAATTTGACTTCAAATT
AATATGAACCCGTA
Found at i:144380 original size:135 final size:135
Alignment explanation
Indices: 144165--144433 Score: 436
Period size: 136 Copynumber: 2.0 Consensus size: 135
144155 ATTCTAAAAA
*
144165 ATTAAGATTAATATATCACTAGGAAAAATATATATGTATATTCACTAGTGCATGCCTTACGTTGC
1 ATTAAGATTAATATATCACTAGGAAAAAAATATATGTATATTCACTAGTGCA--CCTTACGTTGC
144230 TAGAAAATTTATAATATAAATTCACATTTTATTACTTAATTAG-T-TAAGCAAACGAGACACTTT
64 TAGAAAATTTATAATATAAATTCACATTTTATTA-TTAATTAGTTATAAGCAAACGAGACACTTT
144293 TTTTTATT
128 TTTTTATT
*
144301 ATTAAGATTAATATATCACTAGGAAACAAAAATATATGTATATTCACTAGTGC-CCTTACTTTGC
1 ATTAAGATTAATATATCACTAGG-AA-AAAAATATATGTATATTCACTAGTGCACCTTACGTTGC
* *
144365 TAGAAAATTTATAATATAAATTCACATTTTATTATTACTTGGTTATAAGCAAACGAGACACTTTT
64 TAGAAAATTTATAATATAAATTCACATTTTATTATTAATTAGTTATAAGCAAACGAGACACTTTT
144430 TTTT
129 TTTT
144434 TATTTACCTT
Statistics
Matches: 125, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
134 6 0.05
135 45 0.36
136 47 0.38
137 2 0.02
138 25 0.20
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (135 bp):
ATTAAGATTAATATATCACTAGGAAAAAAATATATGTATATTCACTAGTGCACCTTACGTTGCTA
GAAAATTTATAATATAAATTCACATTTTATTATTAATTAGTTATAAGCAAACGAGACACTTTTTT
TTATT
Found at i:154624 original size:28 final size:28
Alignment explanation
Indices: 154584--154656 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
154574 TATTTATCTT
154584 AAAAATGCAAATATCTTTTTTGG-TAAA
1 AAAAATGCAAATATCTTTTTTGGTTAAA
154611 ATAAAATGCAAATATCTTTTTTGGTTAAA
1 A-AAAATGCAAATATCTTTTTTGGTTAAA
*
154640 AAAAATGCAAATCTCTT
1 AAAAATGCAAATATCTT
154657 ACAGAGATCT
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
27 1 0.02
28 37 0.86
29 5 0.12
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.37
Consensus pattern (28 bp):
AAAAATGCAAATATCTTTTTTGGTTAAA
Found at i:169804 original size:12 final size:12
Alignment explanation
Indices: 169787--169814 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
169777 AGGGTGAAGC
169787 CAAAAAAATATA
1 CAAAAAAATATA
169799 CAAAAAAATATA
1 CAAAAAAATATA
169811 CAAA
1 CAAA
169815 CAAGAAGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.75, C:0.11, G:0.00, T:0.14
Consensus pattern (12 bp):
CAAAAAAATATA
Found at i:172207 original size:29 final size:29
Alignment explanation
Indices: 172174--172246 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
172164 GTTAGGTTGA
172174 AGGGGTAAAACGTCCCAAAATTGAAATTC
1 AGGGGTAAAACGTCCCAAAATTGAAATTC
* * * *
172203 AGGGGGTAAAATGT-TCAAGATTGAAGTTC
1 A-GGGGTAAAACGTCCCAAAATTGAAATTC
*
172232 AGGGGCAAAACGTCC
1 AGGGGTAAAACGTCC
172247 GAATACTACA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
28 10 0.29
29 14 0.40
30 11 0.31
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (29 bp):
AGGGGTAAAACGTCCCAAAATTGAAATTC
Found at i:177934 original size:18 final size:18
Alignment explanation
Indices: 177904--177947 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
177894 TTTGATGAGC
*
177904 TTTTGTATG-TTTATTAG
1 TTTTGTAGGTTTTATTAG
177921 ATTTT-TAGGTTTTATTAG
1 -TTTTGTAGGTTTTATTAG
177939 TTTTGTAGG
1 TTTTGTAGG
177948 AGGGAAAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.18, C:0.00, G:0.20, T:0.61
Consensus pattern (18 bp):
TTTTGTAGGTTTTATTAG
Found at i:179315 original size:39 final size:41
Alignment explanation
Indices: 179237--179342 Score: 153
Period size: 39 Copynumber: 2.6 Consensus size: 41
179227 CAAGCAAGAT
* *
179237 GGCTTAACAACACTCTTATTGGTAGTAGTACTACCTCTCATG
1 GGCTTAACTACACTCTCATTGGTAGTAG-ACTACCTCTCATG
*
179279 GGCTTAACTACACTCTCATTGGTAGT-G-CTACCTCTCATT
1 GGCTTAACTACACTCTCATTGGTAGTAGACTACCTCTCATG
*
179318 GGCTTAACTACACTATCATTGGTAG
1 GGCTTAACTACACTCTCATTGGTAG
179343 CAAAACCCCT
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
39 35 0.58
41 1 0.02
42 24 0.40
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (41 bp):
GGCTTAACTACACTCTCATTGGTAGTAGACTACCTCTCATG
Found at i:179328 original size:19 final size:20
Alignment explanation
Indices: 179266--179339 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 20
179256 TGGTAGTAGT
*
179266 ACTAC-CTCTCATGGGCTTA
1 ACTACACTCTCATTGGCTTA
179285 ACTACACTCTCATTGG--TA
1 ACTACACTCTCATTGGCTTA
*
179303 GTGCTAC-CTCTCATTGGCTTA
1 --ACTACACTCTCATTGGCTTA
*
179324 ACTACACTATCATTGG
1 ACTACACTCTCATTGG
179340 TAGCAAAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
18 2 0.04
19 19 0.42
20 22 0.49
21 2 0.04
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (20 bp):
ACTACACTCTCATTGGCTTA
Found at i:179931 original size:15 final size:13
Alignment explanation
Indices: 179899--179932 Score: 59
Period size: 14 Copynumber: 2.5 Consensus size: 13
179889 ATTTGTGTTT
179899 CTTTTTTTTTTTC
1 CTTTTTTTTTTTC
179912 CTTTTATTTTTTTC
1 CTTTT-TTTTTTTC
179926 CTTTTTT
1 CTTTTTT
179933 GGGAGGGGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (13 bp):
CTTTTTTTTTTTC
Found at i:184744 original size:3 final size:3
Alignment explanation
Indices: 184738--184776 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
184728 TAATCATTTA
184738 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
184777 GTGATCCGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:187811 original size:51 final size:51
Alignment explanation
Indices: 187735--188004 Score: 344
Period size: 51 Copynumber: 5.2 Consensus size: 51
187725 CTTATAATTT
* *
187735 AAAAATTTTAGTAATTAGGAGACCGATGAAGGCTGTCCCTCCAAACATTCA
1 AAAAATTTTAGTAATTAGGAGACCGATGAGGGCTGTCCCTCCAAACATTAA
*
187786 AAAAATTTTAGTAATTAGGATACCGATGAGGGCTGTCCCTCCAAACATTAA
1 AAAAATTTTAGTAATTAGGAGACCGATGAGGGCTGTCCCTCCAAACATTAA
* * * *
187837 AAAAAATGTAGTAATTAGGAGACCTATGAGGGCTGTCCATCCAAACATTTTAA
1 AAAAATTTTAGTAATTAGGAGACCGATGAGGGCTGTCCCTCCAAACA--TTAA
* **
187890 AAAATTTAGTAATTTAGTAATTAGGAGACCGATGAGGGCGGTCCCTCCAAACATTTT
1 AAAA---A-T--TTTAGTAATTAGGAGACCGATGAGGGCTGTCCCTCCAAACATTAA
* **
187947 AAAAA-TTTAGTAATTAGGAGACCGATGAGGACTGTCCCTCCAAACATTTT
1 AAAAATTTTAGTAATTAGGAGACCGATGAGGGCTGTCCCTCCAAACATTAA
187997 AAAAATTT
1 AAAAATTT
188005 AGATTACCAT
Statistics
Matches: 193, Mismatches: 17, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
50 48 0.25
51 92 0.48
53 8 0.04
54 1 0.01
56 1 0.01
57 6 0.03
59 37 0.19
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (51 bp):
AAAAATTTTAGTAATTAGGAGACCGATGAGGGCTGTCCCTCCAAACATTAA
Found at i:187975 original size:50 final size:50
Alignment explanation
Indices: 187900--188006 Score: 196
Period size: 50 Copynumber: 2.1 Consensus size: 50
187890 AAAATTTAGT
*
187900 AATTTAGTAATTAGGAGACCGATGAGGGCGGTCCCTCCAAACATTTTAAA
1 AATTTAGTAATTAGGAGACCGATGAGGACGGTCCCTCCAAACATTTTAAA
*
187950 AATTTAGTAATTAGGAGACCGATGAGGACTGTCCCTCCAAACATTTTAAA
1 AATTTAGTAATTAGGAGACCGATGAGGACGGTCCCTCCAAACATTTTAAA
188000 AATTTAG
1 AATTTAG
188007 ATTACCATAG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28
Consensus pattern (50 bp):
AATTTAGTAATTAGGAGACCGATGAGGACGGTCCCTCCAAACATTTTAAA
Found at i:187996 original size:109 final size:109
Alignment explanation
Indices: 187743--188006 Score: 357
Period size: 109 Copynumber: 2.5 Consensus size: 109
187733 TTAAAAATTT
* *
187743 TAGTAATTAGGAGACCGATGAAGG-CTGTCCCTCCAAACA-TTCAAAAA---A-T--TTTAGTAA
1 TAGTAATTAGGAGACCGATG-AGGACTGTCCATCCAAACATTTTAAAAATTTAGTAATTTAGTAA
* *
187800 TTAGGATACCGATGAGGGCTGTCCCTCCAAACATTAAAAAAAATG
65 TTAGGAGACCGATGAGGGCGGTCCCTCCAAACATTAAAAAAAATG
* *
187845 TAGTAATTAGGAGACCTATGAGGGCTGTCCATCCAAACATTTTAAAAAATTTAGTAATTTAGTAA
1 TAGTAATTAGGAGACCGATGAGGACTGTCCATCCAAACATTTT-AAAAATTTAGTAATTTAGTAA
** *
187910 TTAGGAGACCGATGAGGGCGGTCCCTCCAAACATT-TTAAAAATT
65 TTAGGAGACCGATGAGGGCGGTCCCTCCAAACATTAAAAAAAATG
*
187954 TAGTAATTAGGAGACCGATGAGGACTGTCCCTCCAAACATTTTAAAAATTTAG
1 TAGTAATTAGGAGACCGATGAGGACTGTCCATCCAAACATTTTAAAAATTTAG
188007 ATTACCATAG
Statistics
Matches: 142, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
101 3 0.02
102 33 0.23
103 2 0.01
104 5 0.04
107 1 0.01
108 11 0.08
109 46 0.32
110 41 0.29
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (109 bp):
TAGTAATTAGGAGACCGATGAGGACTGTCCATCCAAACATTTTAAAAATTTAGTAATTTAGTAAT
TAGGAGACCGATGAGGGCGGTCCCTCCAAACATTAAAAAAAATG
Found at i:188272 original size:15 final size:15
Alignment explanation
Indices: 188241--188269 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
188231 GCAATGGGCC
188241 CATTTTGTTGCATTT
1 CATTTTGTTGCATTT
188256 CATTTT-TTGCATTT
1 CATTTTGTTGCATTT
188270 TCAATAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.14, C:0.14, G:0.10, T:0.62
Consensus pattern (15 bp):
CATTTTGTTGCATTT
Found at i:190567 original size:656 final size:643
Alignment explanation
Indices: 188798--191327 Score: 2544
Period size: 656 Copynumber: 3.9 Consensus size: 643
188788 AAGTTGACCT
* * * *
188798 GAAATATTTTTTT-CTGATTTTTTTGCAACAATATTCAGAAAAAATATATAATTCAATGACAAGA
1 GAAA-ATTTTTTTCCTGAATTTTTTGCGACAATACTCAGAAAAAATATATAATTCAACGACAAGA
** * **
188862 AGATTAACAAGCTTTTCAAGCTTCTAATATTGTTTTT--TTTTTCCGAAA-TAATTTCTAATTAA
65 AGATTAATGAGCTTTTCAAGCTTCTAATATCGTTTTTCCTTTTT-TTAAATTAATTTCTAATTAA
* * *
188924 ATCGAAACAAGTTTCAAATGCTCATAAAAGCAAATCCTTATCTCCAATGTGACTGAA-ATTTGGT
129 ATCGAAACAAGTTTCAGATGCTCATAAAAGCAAATCCTTATCTCCAATGT-AATTAAGATTTGGT
*
188988 TCGATGAATACAGATAATTCAAGGAGTCGTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGTTC
193 TCGATGAATACATAT-A-TCAAGGAGTCGTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGTTC
* * *
189053 CGGAACGCGTTTTTAGAAAAAAACCGTTA-TGTTTAGTACACCGATTTCGGCTAAAATTTTGCTA
256 CGGAACGCGTTTTTAG-CAAAAACCGTGATTG-TTAGTACA-CGATTTCGGCTAAAATTTTGCAA
* * * * **
189117 AATCTGACCCGAAAACTTTTTCCTCTATTTTTTACCACAATACTTA-AAAAAAAATATAATTCAA
318 AAACTGACCCGAAAACTTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATTTATAATTCAA
*
189181 CGAAAAAAAATTGAAGGGTTTTTCAGACTTCTAATATCATTTTCCCA-TTTTTCCC-AATTT-TT
383 CGAAAAAAAATTGAAGGGTTTTTCAGACTTCTAATATCATTTTTCCATTTTTTCCCGAATTTATT
* * *
189243 TTTATTAAATCGAAACAAGATTTAGATGCTCGTAAAAGCAAATCCTTAAATCCAATGTAGCTGAT
448 TTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAATATAGCTGAT
* * *
189308 ATTTGGTTAGATGAATATAGATTTTTCAAGAAGTCTTTCTACCAAAAATCATGCAAGACTGAGCC
513 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTACCAAAAATCATGCAAAACTGAG-C
* * * *
189373 CGGGTCCCAAAACGCGTTTTTAGCCCAAAAACC--ATAA-CGTACACGAATTCGGATGAAAACTA
577 CGGGACCCAAAACGCGTTTTTAGCCCAAAAACCTGATAATAGTAAAC-AATTCGGATAAAAACTA
189435 ACTC
641 AC-C
* * *
189439 GAAAAGGTTTTTT-CTGAATTTTTTGCGACAATACT----AAGAATATAAAATTCAACGACAAGA
1 GAAAA-TTTTTTTCCTGAATTTTTTGCGACAATACTCAGAAAAAATATATAATTCAACGACAAGA
* *
189499 AGATTAATGGGCTTTT-AAACTTCTAATATCGTTTTTCCATTCTTTTTCAAATTAATTTCTAATT
65 AGATTAATGAGCTTTTCAAGCTTCTAATATCGTTTTTCC-TT-TTTTT-AAATTAATTTCTAATT
* * * ** * *
189563 AAATCGAAACAAGATTCAGATGATCATAAAAGCAAATCCTTGTCTCCAATGTGGTTGAGATTTGA
127 AAATCGAAACAAGTTTCAGATGCTCATAAAAGCAAATCCTTATCTCCAATGTAATTAAGATTTGG
* * *
189628 TTCAATGAATACAAATATTTCATGGAGTCGTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGTT
192 TTCGATGAATAC--ATATATCAAGGAGTCGTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGTT
* * *
189693 CCGGAACGTGTTTTTAGCCAAAAACCGTGATAGTT-TTACACGATTTCGGCTAAAATTTTGCAAA
255 CCGGAACGCGTTTTTAG-CAAAAACCGTGATTGTTAGTACACGATTTCGGCTAAAATTTTGCAAA
* * *
189757 AAATGACCCGAAAACTTTTTCCTCAATTTTTTGCTACAATACACAGAAAAAATTTATAATTCAAC
319 AACTGACCCGAAAACTTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATTTATAATTCAAC
* **
189822 -AAAAAAATATTGAAGGGTTTTTCAGGCTTCTAATATCA-TTTTCCAATTCTTTTTCAAGAATTT
384 GAAAAAAA-ATTGAAGGGTTTTTCAGACTTCTAATATCATTTTTCC-A-T-TTTTTCCCGAATTT
* *
189885 ATTTATAATTAAATCGAAACAAGATTTAGATACTCGTAAAAACAAATCCTTAAATCCAATATGGC
445 ATTT-TAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAATATAGC
* * * * *
189950 TGATAGTTGGTTGGATAAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCAAAACTG
509 TGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTACCAAAAATCATGCAAAACTG
* * *
190015 AGCCGGAACCCTGAAACGCG-TTTTAGCCAAAAAAACCGTGATAAATAGTAAACAAATTCGGATA
574 AGCCGGGACCC-AAAACGCGTTTTTAGCC-CAAAAACC-TGAT-AATAGTAAAC-AATTCGGATA
*
190079 AAAACTGACC
634 AAAACTAACC
* * * * * *
190089 GGAAAATTTTTTTCCCTAAATTTTTGGTGACAATACTCAGAAAAAATATTTAATTAAACAACAAG
1 -GAAAATTTTTTT-CCTGAATTTTTTGCGACAATACTCAGAAAAAATATATAATTCAACGACAAG
* * *
190154 AATATTAATGAGCTTTTCAAGCTTCTAATATCGTTTTTCCCTTGTTTTTTATTTAA-TTCTTAAT
64 AAGATTAATGAGCTTTTCAAGCTTCTAATATCGTTTTT-CCTT-TTTTTAAATTAATTTC-TAAT
* *
190218 TAAATCGAAACAAGTTTCAGATGCTCATAAAAGCCAATCCATATCTCCAATGTAATTAAGATTTG
126 TAAATCGAAACAAGTTTCAGATGCTCATAAAAGCAAATCCTTATCTCCAATGTAATTAAGATTTG
* * *
190283 GTTTGATGAATACATATATGAAGGAGTCGTTGTGCCAAAAATCATGCAAAATTGAGCCGGGGTTC
191 GTTCGATGAATACATATATCAAGGAGTCGTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGTTC
* * * *
190348 CGGAATGCGTTTTTAGCAGAAATCCGTGATTGTTAGTATACGATTTCGGCTAAGATTTTGCAAAA
256 CGGAACGCGTTTTTAGCA-AAAACCGTGATTGTTAGTACACGATTTCGGCTAAAATTTTGCAAAA
* *
190413 ACTGACCCGAAAACTTTTTCGTCAAATATTTTTGCCAAAATACTCAGAAAAAATTTATAATTCAA
320 ACTGACCCGAAAACTTTTTCCTC-AAT-TTTTTGCCACAATACTCAGAAAAAATTTATAATTCAA
* * *
190478 CGCAAAAAAATTGAAGGATTTTTCAGACTTCTAAAATCATTTTTCCATTTTTTCCCCGAATTTAT
383 CGAAAAAAAATTGAAGGGTTTTTCAGACTTCTAATATCATTTTTCCATTTTTT-CCCGAATTTAT
* * * * * *
190543 CTTTAATTAAATCGAAATAAGATTTAGATGCTTGTAAAAATAAAACCTTAAATCCAATCTCGCTG
447 -TTTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAATATAGCTG
* * * *
190608 ATATTTGGTTAGACGAATATAGATATTTCAAGGAGTATTTCTACCAAAATTCATACAAAACTGAG
511 ATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTACCAAAAATCATGCAAAACTGAG
* * * **
190673 CCGGGGCCCCAAAACGCGTTTTTAGCCCAAAAACTATGATTAATAGTAAACGATTTTGACTAAAA
576 CC-GGGACCCAAAACGCGTTTTTAGCCCAAAAAC-CTGA-TAATAGTAAACAATTCGGA-TAAAA
190738 ACTAAGCC
637 ACTAA-CC
* * *
190746 AAAAATTTTTTTCCTGAATTTTTTGCAACAATACTCAGAAAAAATAGATAATTCAACGACAAGAA
1 GAAAATTTTTTTCCTGAATTTTTTGCGACAATACTCAGAAAAAATATATAATTCAACGACAAGAA
* * * *
190811 GA-TAA-CATGCTTTTCAAGCTTCTAATATCGTGTTTTCATTTTTTTTTTTTCGAATTTATTTCT
66 GATTAATGA-GCTTTTCAAGCTTCTAATATCGT-TTTTC-----CTTTTTTT-AAATTAATTTCT
* * * * * ** * * * *
190874 AATTAAATCGAAACTAG-ATCTAGATGCTCGTAAAAACAAAACCTTAAATCCAATCT-CTCTGAT
123 AATTAAATCGAAACAAGTTTC-AGATGCTCATAAAAGCAAATCCTTATCTCCAATGTAAT-TAAG
* * * * * *
190937 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTC-TTTCTGCCAAAAATCATGCAAAACTAAGC
186 ATTTGGTTCGATG-A-ATACATATATCAAGGAGTCGTTGC-GCCAAAAATCATGCAAAATTGAGC
* * * ** * * *
191001 TGAGGTCCCAAAACGCGTTTTTAGTAAAAAAAC-TG--TG--A-TA-A--A-TT---ATAAACGA
248 CGGGGTTCCGGAACGCGTTTTTAG-CAAAAACCGTGATTGTTAGTACACGATTTCGGCTAAA--A
* * * *
191053 TTTTGACTAAAAATTGACCCGAAAATTTTTTTCCTGAATTTTTTGCAACAATACTCAGAAAAAAT
310 TTTTG-C-AAAAACTGACCCGAAAA-CTTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAAT
* * * * ** * * * **
191118 ATATAATTCAATGATAAGAAGATT-AACATGCTTTTCA-AGGTTTTAATATGTTTTTTCCATTTT
372 TTATAATTCAACGA-AAAAAAATTGAA-GGGTTTTTCAGA-CTTCTAATATCATTTTTCCATTTT
* * * * * * *
191181 TT--CGAATTAATTTCTAATTAAAACGAAACAAG-TTTCAGATGCTCATGAAAGCAAATCATTAT
434 TTCCCGAATTTATTT-TAATTAAATCGAAACAAGATTT-AGATGCTCGTAAAAACAAATCCTTAA
* * * * * * * * * **** *
191243 CTCGAATGTGGCTGAAATTTGGTTCGATGAATACAAATAATTCAAGGAGTCGCAGTGCCAAAAAT
497 ATCCAATATAGCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTACCAAAAAT
*
191308 CAGGCAAAAACTGAGCCGGG
562 CATGC-AAAACTGAGCCGGG
191328 GTTCCGGAAC
Statistics
Matches: 1573, Mismatches: 239, Indels: 146
0.80 0.12 0.07
Matches are distributed among these distances:
636 18 0.01
637 35 0.02
639 75 0.05
640 60 0.04
641 178 0.11
642 1 0.00
643 9 0.01
644 5 0.00
645 18 0.01
646 128 0.08
648 8 0.01
649 98 0.06
650 26 0.02
651 68 0.04
652 73 0.05
653 10 0.01
654 103 0.07
655 113 0.07
656 283 0.18
657 107 0.07
658 24 0.02
659 64 0.04
660 8 0.01
661 60 0.04
662 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (643 bp):
GAAAATTTTTTTCCTGAATTTTTTGCGACAATACTCAGAAAAAATATATAATTCAACGACAAGAA
GATTAATGAGCTTTTCAAGCTTCTAATATCGTTTTTCCTTTTTTTAAATTAATTTCTAATTAAAT
CGAAACAAGTTTCAGATGCTCATAAAAGCAAATCCTTATCTCCAATGTAATTAAGATTTGGTTCG
ATGAATACATATATCAAGGAGTCGTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGTTCCGGAA
CGCGTTTTTAGCAAAAACCGTGATTGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGAC
CCGAAAACTTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATTTATAATTCAACGAAAAAA
AATTGAAGGGTTTTTCAGACTTCTAATATCATTTTTCCATTTTTTCCCGAATTTATTTTAATTAA
ATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAATATAGCTGATATTTGGTT
AGATGAATATAGATATTTCAAGGAGTCTTTCTACCAAAAATCATGCAAAACTGAGCCGGGACCCA
AAACGCGTTTTTAGCCCAAAAACCTGATAATAGTAAACAATTCGGATAAAAACTAACC
Found at i:190921 original size:327 final size:324
Alignment explanation
Indices: 188771--192356 Score: 2025
Period size: 327 Copynumber: 11.0 Consensus size: 324
188761 TTATTTCAAT
* ** * * *
188771 GTAAATGATTTTGACT-AAAGTTGACCTGAAATATTTTTTT-CTGATTTTTTTGCAACAATATTC
1 GTAAACGATTTTGACTAAAAACTAACC-GAAA-ATTTTTTTCCTGAATTTTTTGCAACAATACTC
* * *
188834 AGAAAAAATATATAATTCAATGACAAGAAGATTAACAAGCTTTTCAAGCTTCTAATA----TTGT
64 AGAAAAAATATATAATTCAACGACAAGAAGATTAA-ATGCTTTTCAAGCTTCTAATATCGTTTTT
* * * * * *
188895 ---TTTTTTTTTCCGAAATAATTTCTAATTAAATCGAAACAAG-TTTCAAATGCTCATAAAAGCA
128 CCATTTTTTTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTT-AGATGCTCGTAAAAACA
** * * * * *
188956 AATCCTTATCTCCAATGT-GACTGAAATTTGGTTCGATGAATACAGATAATTCAAGGAGTCGTTG
192 AATCCTTAAATCCAATGTAG-CTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTC-TTT
* * ** ** *
189020 C-GCCAAAAATCATGCAAAATTGAGCCGGGGTTCCGGAACGCGTTTTTAG-AAAAAAACCGTTAT
255 CTGCCAAAAATCATGCAAAACTGAGCCGGGGTCCCAAAACGCGTTTTTAGCCCAAAAACCGTGAT
*
189083 GT-TTA
320 -TAATA
* * * * * ** *
189088 GTACACCGATTTCGGCTAAAATTTTGCTAAATCTGACCCGAAAA-CTTTTTCCTCTATTTTTTAC
1 GTA-AACGATTTTGACT--AA-------AAA-CT-AACCGAAAATTTTTTTCCTGAATTTTTTGC
* * * * * ** *
189152 CACAATACTTA-AAAAAAAATATAATTCAACGA-AAAAAAATTGAAGGGTTTTTC-AGACTTCTA
54 AACAATACTCAGAAAAAATATATAATTCAACGACAAGAAGATT-AAATGCTTTTCAAG-CTTCTA
* * * * *
189214 ATATCATTTTCCCA----TTTTTCCCAATTT-TTT-TTATTAAATCGAAACAAGATTTAGATGCT
117 ATATCGTTTTTCCATTTTTTTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATGCT
* *
189273 CGTAAAAGCAAATCCTTAAATCCAATGTAGCTGATATTTGGTTAGATGAATATAGATTTTTCAAG
182 CGTAAAAACAAATCCTTAAATCCAATGTAGCTGATATTTGGTTAGATGAATATAGATATTTCAAG
* * * *
189338 AAGTCTTTCTACCAAAAATCATGCAAGACTGAGCCCGGGTCCCAAAACGCGTTTTTAGCCCAAAA
247 GAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGTCCCAAAACGCGTTTTTAGCCCAAAA
*
189403 ACC---A-TAA-C
312 ACCGTGATTAATA
* ** * * *
189411 GTACACGAATTCGGA-TGAAAACTAACTCGAAAAGGTTTTTT-CTGAATTTTTTGCGACAATACT
1 GTAAACG-ATTTTGACTAAAAACTAAC-CGAAAA-TTTTTTTCCTGAATTTTTTGCAACAATACT
* * *
189474 ----AAGAATATAAAATTCAACGACAAGAAGATT-AATGGGCTTTT-AAACTTCTAATATCGTTT
63 CAGAAAAAATATATAATTCAACGACAAGAAGATTAAAT--GCTTTTCAAGCTTCTAATATCGTTT
* * * * * * *
189533 TTCCA--TTCTTTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCATAAAAGC
126 TTCCATTTTTTTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAAC
*** * * * * * * *
189596 AAATCCTTGTCTCCAATGTGGTTGAGATTTGATTCA-ATGAATACAAATATTTCATGGAGTCGTT
191 AAATCCTTAAATCCAATGTAGCTGATATTTGGTT-AGATGAATATAGATATTTCAAGGAGTC-TT
* * * ** *
189660 GC-GCCAAAAATCATGCAAAATTGAGCCGGGGTTCCGGAACGTGTTTTTAG-CCAAAAACCGTGA
254 TCTGCCAAAAATCATGCAAAACTGAGCCGGGGTCCCAAAACGCGTTTTTAGCCCAAAAACCGTGA
* *
189723 -TAGTT
319 TTAATA
* * * * * * * * *
189728 TTACACGATTTCGGCTAAAATTTTGCAAAAAATGACCCGAAAA-CTTTTTCCTCAATTTTTTGCT
1 GTAAACGATTT----T--GA--CT--AAAAACT-AACCGAAAATTTTTTTCCTGAATTTTTTGCA
* * * * * ** * *
189792 ACAATACACAGAAAAAATTTATAATTCAAC-AAAAAAATATTGAAGGGTTTTTCAGGCTTCTAAT
55 ACAATACTCAGAAAAAATATATAATTCAACGACAAGAAGATT-AAATGCTTTTCAAGCTTCTAAT
* * * * *
189856 ATC-ATTTTCCA-ATTCTTTTTCAAGAATTTATTTATAATTAAATCGAAACAAGATTTAGATACT
119 ATCGTTTTTCCATTTTTTTTTTC--GAATTTATTTCTAATTAAATCGAAACAAGATTTAGATGCT
* * * * *
189919 CGTAAAAACAAATCCTTAAATCCAATATGGCTGATAGTTGGTTGGATAAATATAGATATTTCAAG
182 CGTAAAAACAAATCCTTAAATCCAATGTAGCTGATATTTGGTTAGATGAATATAGATATTTCAAG
* ** * *
189984 GAGTCTTTTTGCCAAAAATCATGCAAAACTGAGCC-GGAACCCTGAAACGCG-TTTTAGCCAAAA
247 GAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGTCCC-AAAACGCGTTTTTAGCC-CAA
*
190047 AAACCGTGATAAATA
310 AAACCGTGATTAATA
* ** * * * **
190062 GTAAACAAATTCGGA-TAAAAACTGACCGGAAAATTTTTTTCCCTAAATTTTTGGTGACAATACT
1 GTAAAC-GATTTTGACTAAAAACTAACC-GAAAATTTTTTT-CCTGAATTTTTTGCAACAATACT
* * * *
190126 CAGAAAAAATATTTAATTAAACAACAAGAATATT-AATGAGCTTTTCAAGCTTCTAATATCGTTT
63 CAGAAAAAATATATAATTCAACGACAAGAAGATTAAAT--GCTTTTCAAGCTTCTAATATCGTTT
* * * *
190190 TTCC-CTTGTTTTTT---ATTTAATTCTTAATTAAATCGAAACAAG-TTTCAGATGCTCATAAAA
126 TTCCATTTTTTTTTTCGAATTTATTTC-TAATTAAATCGAAACAAGATTT-AGATGCTCGTAAAA
* * * ** ** * * * * * * *
190250 GCCAATCCATATCTCCAATGTAATTAAGATTTGGTTTGATG-A-ATACATATATGAAGGAGTCGT
189 ACAAATCCTTAAATCCAATGTAGCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTT
* * * ** * *
190313 TGTGCCAAAAATCATGCAAAATTGAGCCGGGGTTCCGGAATGCGTTTTTAG--CAGAAATCCGTG
254 TCTGCCAAAAATCATGCAAAACTGAGCCGGGGTCCCAAAACGCGTTTTTAGCCCA-AAAACCGTG
**
190376 ATTGTTA
318 ATTAATA
* * * * * *
190383 GTATACGATTTCGGCTAAGATTTTGCAAAAACTGACCCGAAAA-CTTTTTCGTCAAATATTTTTG
1 GTAAACGATTT----T--GA--CT--AAAAACT-AACCGAAAATTTTTTTCCT-GAAT-TTTTTG
* * * * * *
190447 CCAA-AATACTCAGAAAAAATTTATAATTCAACG-CAAAAAAATTGAAGGATTTTTC-AGACTTC
53 -CAACAATACTCAGAAAAAATATATAATTCAACGACAAGAAGATTAAATG-CTTTTCAAG-CTTC
* * *** *
190509 TAAAATCATTTTTCCA-TTTTTTCCCCGAATTTATCTT-TAATTAAATCGAAATAAGATTTAGAT
115 TAATATCGTTTTTCCATTTTTTTTTTCGAATTTAT-TTCTAATTAAATCGAAACAAGATTTAGAT
* * * * * *
190572 GCTTGTAAAAATAAAACCTTAAATCCAATCTCGCTGATATTTGGTTAGACGAATATAGATATTTC
179 GCTCGTAAAAACAAATCCTTAAATCCAATGTAGCTGATATTTGGTTAGATGAATATAGATATTTC
* * * * *
190637 AAGGAGTATTTCTACCAAAATTCATACAAAACTGAGCCGGGGCCCCAAAACGCGTTTTTAGCCCA
244 AAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGTCCCAAAACGCGTTTTTAGCCCA
**
190702 AAAACTATGATTAATA
309 AAAACCGTGATTAATA
*
190718 GTAAACGATTTTGACTAAAAACTAAGCCAAAAATTTTTTTCCTGAATTTTTTGCAACAATACTCA
1 GTAAACGATTTTGACTAAAAACTAA-CCGAAAATTTTTTTCCTGAATTTTTTGCAACAATACTCA
*
190783 GAAAAAATAGATAATTCAACGACAAGAAGA-TAACATGCTTTTCAAGCTTCTAATATCGTGTTTT
65 GAAAAAATATATAATTCAACGACAAGAAGATTAA-ATGCTTTTCAAGCTTCTAATATCGT-TTTT
* *
190847 -CATTTTTTTTTTTTCGAATTTATTTCTAATTAAATCGAAACTAGATCTAGATGCTCGTAAAAAC
128 CCA--TTTTTTTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAAC
* * **
190911 AAAACCTTAAATCCAATCTCTCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTC
191 AAATCCTTAAATCCAATGTAGCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTC
* * * *** * *
190976 TGCCAAAAATCATGCAAAACTAAGCTGAGGTCCCAAAACGCGTTTTTAGTAAAAAAACTGTGATA
256 TGCCAAAAATCATGCAAAACTGAGCCGGGGTCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATT
191041 AATTA
321 AA-TA
* *
191046 -TAAACGATTTTGACTAAAAATTGACCCGAAAATTTTTTTCCTGAATTTTTTGCAACAATACTCA
1 GTAAACGATTTTGACTAAAAACT-AACCGAAAATTTTTTTCCTGAATTTTTTGCAACAATACTCA
* * * *
191110 GAAAAAATATATAATTCAATGATAAGAAGATTAACATGCTTTTCAAGGTTTTAATAT-GTTTTTT
65 GAAAAAATATATAATTCAACGACAAGAAGATTAA-ATGCTTTTCAAGCTTCTAATATCG-TTTTT
* * * * *
191174 CCA----TTTTTTCGAATTAATTTCTAATTAAAACGAAACAAG-TTTCAGATGCTCATGAAAGCA
128 CCATTTTTTTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTT-AGATGCTCGTAAAAACA
* ** * * * * * * * ****
191234 AATCATTATCTCGAATGTGGCTGAAATTTGGTTCGATGAATACAAATAATTCAAGGAGTCGCAGT
192 AATCCTTAAATCCAATGTAGCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCT
* * ** * *
191299 GCCAAAAATCAGGCAAAAACTGAGCCGGGGTTCCGGAACGCGTTTTTTTGCCAAAAACAAAAAAT
257 GCCAAAAATCATGC-AAAACTGAGCCGGGGTCCCAAAACGCG-TTTTTAGCC-----C-AAAAAC
**
191364 C-TGACCCGAAAACGGTA
314 CGTGA----TTAA---TA
* ** * ** ** *
191381 GTACACTTCGGCTAAAATTTTG--TAAAGTCTGACCCGAAAA-CGTTTTCCTCTATTTTTTGCCA
1 GTA-A--AC-G-----ATTTTGACTAAAAACT-AACCGAAAATTTTTTTCCTGAATTTTTTGCAA
* * * * ** * *
191443 CAATA--GAAAAAAAAT-TATAATTCAACGA-AAAAAAATTGAAGGGTTTTTCAGGCTTCTAATA
56 CAATACTCAGAAAAAATATATAATTCAACGACAAGAAGATT-AAATGCTTTTCAAGCTTCTAATA
* * * * * *
191504 TCATTTTCCCA---TTTTTTCCTAA-TT-TTT-T-ATTAAATCGAAACAAGATTCAGATACTCG-
120 TCGTTTTTCCATTTTTTTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGT
* * *
191561 AAAAGA-AAATTCTTAAATCCAATGT-GATTGATATTTGGTTAGATGAATATAGATTTTTCAAGG
185 AAAA-ACAAATCCTTAAATCCAATGTAG-CTGATATTTGGTTAGATGAATATAGATATTTCAAGG
* * * * * * *
191624 AGTCTTCCTGACAAAAATCATGCAAAATTGAGCCCGGGCCCCGAAACGCGTTTTTAGCCTAAAAA
248 AGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGTCCCAAAACGCGTTTTTAGCCCAAAAA
* *
191689 CCGTGATGACTA
313 CCGTGATTAATA
* * ** * ** * *
191701 GTACACGAATCCGGCTAAAAACTGTCCCGAAAAGTTTTTTTTTCNGAATTTTTTGCAACAATACT
1 GTAAACGATTTTGACTAAAAACT-AACCGAAAA--TTTTTTTCCTGAATTTTTTGCAACAATACT
* *
191766 TAGAAAAAAATATATAATTCAACGGCAAGAAGATT-AATGAGCTTTT-AAGCTTCTAATATCGTT
63 CAG-AAAAAATATATAATTCAACGACAAGAAGATTAAAT--GCTTTTCAAGCTTCTAATATCGTT
* * * *
191829 TTTCC-CTTGTTTTTT---ATTTAATTTATAATTAAATCGAAACAAG-TTTCAGATGCTCATAAA
125 TTTCCATTTTTTTTTTCGAATTT-ATTTCTAATTAAATCGAAACAAGATTT-AGATGCTCGTAAA
* * * ** ** * * * * * * *
191889 AGCCAATCCATATCTCCAATGTAATTAAGATTTGGTTTGATGAATA-CGGTA--TGAAGGAGTCG
188 AACAAATCCTTAAATCCAATGTAGCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCT
* ** * ** * *
191951 TTGTGCCAAAAATCATGCAAAACTGAGATGGGGTTCCGGAACGCGTTTTTAG--TAGAAATCCGT
253 TTCTGCCAAAAATCATGCAAAACTGAGCCGGGGTCCCAAAACGCGTTTTTAGCCCA-AAAACCGT
***
192014 GATGGTTA
317 GATTAATA
* * * * * *
192022 GTATACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAA--CTTTTCCTCAAATTTTTTTT
1 GTAAACGATTT----T--GA--CT--AAAAACT-AACCGAAAATTTTTTTCCT-GAA--TTTTTT
* * * ** * *
192085 GCCAA-AATACTCAGAAAAAATTTATAATTCAACG-CAAAAAAATTGAAGGGTTTTTCAGGCTTC
52 G-CAACAATACTCAGAAAAAATATATAATTCAACGACAAGAAGATT-AAATGCTTTTCAAGCTTC
* * *** *
192148 TAAAATC-ATTTTCCA--TTTTCCCT-GAATTTATTTCTAATTAAATCGAAACAAGATTTTGATG
115 TAATATCGTTTTTCCATTTTTTTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATG
* * * * * *
192209 CTCGTAAAACCAAAACCTTAAATCCAATCTCGCTGATATTTGGTTAGACGGATATAGATATTTCA
180 CTCGTAAAAACAAATCCTTAAATCCAATGTAGCTGATATTTGGTTAGATGAATATAGATATTTCA
* * * * *
192274 AGGAGTATTTCTGCCAAAATTCATACAAAACTGAGCCGTGGCCCCAAAACGCGTTTTTAGCCCAA
245 AGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGTCCCAAAACGCGTTTTTAGCCCAA
**
192339 AAACTATGATTAATA
310 AAACCGTGATTAATA
192354 GTA
1 GTA
Statistics
Matches: 2495, Mismatches: 558, Indels: 417
0.72 0.16 0.12
Matches are distributed among these distances:
309 1 0.00
310 35 0.01
311 18 0.01
312 17 0.01
313 48 0.02
314 126 0.05
315 4 0.00
316 27 0.01
317 10 0.00
318 10 0.00
319 9 0.00
320 45 0.02
321 53 0.02
322 220 0.09
323 59 0.02
324 153 0.06
325 82 0.03
326 99 0.04
327 457 0.18
328 163 0.07
329 89 0.04
330 105 0.04
331 127 0.05
332 198 0.08
333 47 0.02
334 128 0.05
335 48 0.02
336 7 0.00
337 4 0.00
338 31 0.01
339 23 0.01
340 9 0.00
342 22 0.01
343 15 0.01
345 6 0.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (324 bp):
GTAAACGATTTTGACTAAAAACTAACCGAAAATTTTTTTCCTGAATTTTTTGCAACAATACTCAG
AAAAAATATATAATTCAACGACAAGAAGATTAAATGCTTTTCAAGCTTCTAATATCGTTTTTCCA
TTTTTTTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATC
CTTAAATCCAATGTAGCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCA
AAAATCATGCAAAACTGAGCCGGGGTCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATTAATA
Found at i:190925 original size:983 final size:977
Alignment explanation
Indices: 189879--191871 Score: 2329
Period size: 983 Copynumber: 2.0 Consensus size: 977
189869 TCTTTTTCAA
* *
189879 GAATTTATTTATAATTAAATCGAAACAAGATTTAGATACTCGTAAAAACAAATCCTTAAATCCAA
1 GAATTTATTTATAATTAAATCGAAACAAGATCTAGATACTCGTAAAAACAAAACCTTAAATCCAA
* * *
189944 TATGGCTGATAGTTGGTTGGATAAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCA
66 TATCGCTGATAGTTGGTTAGATAAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCA
* *
190009 AAACTGAGCCG-GAACCCTGAAACGCG-TTTTAGCCAAAAAAACCGTGATAAA-TAGTAAACAAA
131 AAACTAAGCCGAGAACCC-AAAACGCGTTTTTAG-CAAAAAAACCGTGATAAATTA-TAAAC-AA
* **
190071 TTCGGA-TAAAAACTGACCGGAAAATTTTTTTCCCTAAATTTTTGGTGACAATACTCAGAAAAAA
192 TTCGGACTAAAAACTGACCCGAAAATTTTTTT-CCTAAATTTTTGGCAACAATACTCAGAAAAAA
* * * *
190135 TATTTAATTAAACAACAAGAATATTAATGA-GCTTTTCAAGCTTCTAATATCG-TTTTTCCCTTG
256 TATATAATTAAACAACAAGAAGATTAA-CATGCTTTTCAAGCTTCTAATAT-GTTTTTTCCATT-
** * * *
190198 TTTTTTATTTAA-TTCTTAATTAAATCGAAACAAGTTTCAGATGCTCATAAAAGCCAATCCA-TA
318 TTTTCGAATTAATTTC-TAATTAAAACGAAACAAGTTTCAGATGCTCATAAAAGCAAAT-CATTA
* * * * **
190261 TCTCCAATGT-AATTAAGATTTGGTTTGATGAATACATAT-A-TGAAGGAGTCGTTGTGCCAAAA
381 TCTCCAATGTGAATGAA-ATTTGGTTCGATGAATACAAATAATTCAAGGAGTCGCAGTGCCAAAA
* * * * ** **
190323 ATCATGC-AAAATTGAGCCGGGGTTCCGGAATGCG-TTTTTAG-CAGAAATC-CGTGA-TTG-TT
445 ATCAGGCAAAAACTGAGCCGGGGTTCCGGAACGCGTTTTTTAGCCA-AAAACAC-TGACCCGAAA
* * * *
190382 A-GTA-TACGATTTCGGCTAAGATTTTGCAAAAACTGACCCGAAAACTTTTTCGTCAAATATTTT
508 ACGTAGTAC-ACTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAACGTTTTCCTC-AAT-TTTT
* *
190445 TGCCAAAATACTCAGAAAAAATTTATAATTCAACGCAAAAAAATTGAAGGATTTTTCAGACTTCT
570 TGCCAAAATA--CA-AAAAAAATTATAATTCAACGAAAAAAAATTGAAGGATTTTTCAGACTTCT
* * * *
190510 AAAATCATTTTTCCATTTTTTCCCCGAATTTATCTTTAATTAAATCGAAATAAGATTTAGATGCT
632 AAAATCATTTTCCCATTTTTT--CCGAA-TT-T-TTT-ATTAAATCGAAACAAGATTCAGATACT
*
190575 TGTAAAA-ATAAAACCTTAAATCCAATCTCG-CTGATATTTGGTTAGACGAATATAGATATTTCA
691 CG-AAAAGA-AAAACCTTAAATCCAATCT-GACTGATATTTGGTTAGACGAATATAGATATTTCA
* * *
190638 AGGAGTATTTCT-ACCAAAATTCATACAAAACTGAGCCGGGGCCCCAAAACGCGTTTTTAGCCCA
753 AGGAGTATTCCTGA-CAAAAATCATACAAAACTGAGCCCGGGCCCCAAAACGCGTTTTTAGCCCA
* * * ** *
190702 AAAACTATGATTAATAGTAAACGATTTTGACTAAAAACTAAGCC-AAAA-ATTTTTTTCCTGAAT
817 AAAACCATGATGAATAGTAAACGAATCCGACTAAAAACTAACCCGAAAAGATTTTTTTCCTGAAT
190765 TTTTTGCAACAATACTCAG-AAAAAATAGATAATTCAACGACAAGAAGATAACAT-GCTTTTCAA
882 TTTTTGCAACAATACTCAGAAAAAAATAGATAATTCAACGACAAGAAGATAA-ATAGCTTTT-AA
190828 GCTTCTAATATCGTGTTTTCATTTTTTTTTTTTC
945 GCTTCTAATATCGT-TTTTCATTTTTTTTTTTTC
* * *
190862 GAATTTATTTCTAATTAAATCGAAACTAGATCTAGATGCTCGTAAAAACAAAACCTTAAATCCAA
1 GAATTTATTTATAATTAAATCGAAACAAGATCTAGATACTCGTAAAAACAAAACCTTAAATCCAA
* * * *
190927 TCTCTCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCA
66 TATCGCTGATAGTTGGTTAGATAAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCA
* ** * * * **
190992 AAACTAAGCTGAGGTCCCAAAACGCGTTTTTAGTAAAAAAACTGTGATAAATTATAAACGATTTT
131 AAACTAAGCCGAGAACCCAAAACGCGTTTTTAGCAAAAAAACCGTGATAAATTATAAACAATTCG
* * *
191057 GACTAAAAATTGACCCGAAAATTTTTTTCCTGAATTTTTTGCAACAATACTCAGAAAAAATATAT
196 GACTAAAAACTGACCCGAAAATTTTTTTCCTAAATTTTTGGCAACAATACTCAGAAAAAATATAT
* ** * * *
191122 AATTCAATGATAAGAAGATTAACATGCTTTTCAAGGTTTTAATATGTTTTTTCCATTTTTTCGAA
261 AATTAAACAACAAGAAGATTAACATGCTTTTCAAGCTTCTAATATGTTTTTTCCATTTTTTCGAA
* *
191187 TTAATTTCTAATTAAAACGAAACAAGTTTCAGATGCTCATGAAAGCAAATCATTATCTCGAATGT
326 TTAATTTCTAATTAAAACGAAACAAGTTTCAGATGCTCATAAAAGCAAATCATTATCTCCAATGT
**
191252 GGCTGAAATTTGGTTCGATGAATACAAATAATTCAAGGAGTCGCAGTGCCAAAAATCAGGCAAAA
391 GAATGAAATTTGGTTCGATGAATACAAATAATTCAAGGAGTCGCAGTGCCAAAAATCAGGCAAAA
*
191317 ACTGAGCCGGGGTTCCGGAACGCGTTTTTTTGCCAAAAACAAAAAATCTGACCCGAAAACGGTAG
456 ACTGAGCCGGGGTTCCGGAACGCGTTTTTTAGCCAAAAAC-----A-CTGACCCGAAAAC-GTAG
* ** * *
191382 TACACTTCGGCTAAAATTTTGTAAAGTCTGACCCGAAAACGTTTTCCTCTATTTTTTGCCACAAT
514 TACACTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAACGTTTTCCTCAATTTTTTGCCAAAAT
* * * *
191447 AGAAAAAAAATTATAATTCAACGAAAAAAAATTGAAGGGTTTTTCAGGCTTCTAATATCATTTTC
579 ACAAAAAAAATTATAATTCAACGAAAAAAAATTGAAGGATTTTTCAGACTTCTAAAATCATTTTC
* **
191512 CCATTTTTTCCTAATTTTTTATTAAATCGAAACAAGATTCAGATACTCGAAAAGAAAATTCTTAA
644 CCATTTTTTCCGAATTTTTTATTAAATCGAAACAAGATTCAGATACTCGAAAAGAAAAACCTTAA
* * * * *
191577 ATCCAATGTGATTGATATTTGGTTAGATGAATATAGATTTTTCAAGGAGTCTTCCTGACAAAAAT
709 ATCCAATCTGACTGATATTTGGTTAGACGAATATAGATATTTCAAGGAGTATTCCTGACAAAAAT
* * * * * * *
191642 CATGCAAAATTGAGCCCGGGCCCCGAAACGCGTTTTTAGCCTAAAAACCGTGATGACTAGTACAC
774 CATACAAAACTGAGCCCGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCATGATGAATAGTAAAC
* ** * * * *
191707 GAATCCGGCTAAAAACTGTCCCGAAAAGTTTTTTTTTCNGAATTTTTTGCAACAATACTTAGAAA
839 GAATCCGACTAAAAACTAACCCGAAAAGATTTTTTTCCTGAATTTTTTGCAACAATACTCAGAAA
* * * **
191772 AAAATATATAATTCAACGGCAAGAAGATTAATGAGCTTTTAAGCTTCTAATATCGTTTTTC--CC
904 AAAATAGATAATTCAACGACAAGAAGATAAAT-AGCTTTTAAGCTTCTAATATCGTTTTTCATTT
*
191835 TTGTTTTTT-
968 TTTTTTTTTC
191844 --ATTTAATTTATAATTAAATCGAAACAAG
1 GAATTT-ATTTATAATTAAATCGAAACAAG
191872 TTTCAGATGC
Statistics
Matches: 854, Mismatches: 121, Indels: 72
0.82 0.12 0.07
Matches are distributed among these distances:
980 6 0.01
981 102 0.12
982 89 0.10
983 347 0.41
984 68 0.08
985 50 0.06
986 48 0.06
987 8 0.01
988 4 0.00
990 65 0.08
991 4 0.00
992 2 0.00
993 14 0.02
994 2 0.00
995 42 0.05
996 3 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (977 bp):
GAATTTATTTATAATTAAATCGAAACAAGATCTAGATACTCGTAAAAACAAAACCTTAAATCCAA
TATCGCTGATAGTTGGTTAGATAAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCA
AAACTAAGCCGAGAACCCAAAACGCGTTTTTAGCAAAAAAACCGTGATAAATTATAAACAATTCG
GACTAAAAACTGACCCGAAAATTTTTTTCCTAAATTTTTGGCAACAATACTCAGAAAAAATATAT
AATTAAACAACAAGAAGATTAACATGCTTTTCAAGCTTCTAATATGTTTTTTCCATTTTTTCGAA
TTAATTTCTAATTAAAACGAAACAAGTTTCAGATGCTCATAAAAGCAAATCATTATCTCCAATGT
GAATGAAATTTGGTTCGATGAATACAAATAATTCAAGGAGTCGCAGTGCCAAAAATCAGGCAAAA
ACTGAGCCGGGGTTCCGGAACGCGTTTTTTAGCCAAAAACACTGACCCGAAAACGTAGTACACTT
CGGCTAAAATTTTGCAAAAACTGACCCGAAAACGTTTTCCTCAATTTTTTGCCAAAATACAAAAA
AAATTATAATTCAACGAAAAAAAATTGAAGGATTTTTCAGACTTCTAAAATCATTTTCCCATTTT
TTCCGAATTTTTTATTAAATCGAAACAAGATTCAGATACTCGAAAAGAAAAACCTTAAATCCAAT
CTGACTGATATTTGGTTAGACGAATATAGATATTTCAAGGAGTATTCCTGACAAAAATCATACAA
AACTGAGCCCGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCATGATGAATAGTAAACGAATCCG
ACTAAAAACTAACCCGAAAAGATTTTTTTCCTGAATTTTTTGCAACAATACTCAGAAAAAAATAG
ATAATTCAACGACAAGAAGATAAATAGCTTTTAAGCTTCTAATATCGTTTTTCATTTTTTTTTTT
TC
Found at i:191622 original size:656 final size:645
Alignment explanation
Indices: 190862--192334 Score: 1665
Period size: 656 Copynumber: 2.2 Consensus size: 645
190852 TTTTTTTTTC
*
190862 GAATTTATTTCTAATTAAATCGAAACTAGA-TCTAGATGCTCGTAAAAACAAAACCTTAAATCCA
1 GAATTTATTTCTAATTAAATCGAAACAAGATTC-AGATGCTCGT-AAAA-AAAACCTTAAATCCA
*
190926 ATCTCTCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGC
63 ATCTGT-TGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGC
* * * * * * *
190991 AAAACTAAGCTGAGGTCCCAAAACGCGTTTTTAGTAAAAAAACTGTGATAAATTA-TAAACGATT
127 AAAACTGAGCCG-GGCCCCAAAACGCGTTTTTAGCAAAAAAACCGTGAT-AACTAGTAAACGAAT
** *
191055 TTGACTAAAAATTGACCCGAAAA-TTTTTTTCCTGAATTTTTTGCAACAATACTCAG-AAAAAAT
190 CCGACTAAAAACTGACCCGAAAAGTTTTTTTCCTGAATTTTTTGCAACAATACTCAGAAAAAAAT
* * * *
191118 ATATAATTCAATGATAAGAAGATTAA-CATGCTTTTCAAGGTTTTAATAT-GTTTTTTCCATT-T
255 ATATAATTCAACGACAAGAAGATTAATCA-GCTTTT-AAGCTTCTAATATCG-TTTTTCCATTGT
* *
191180 TTTCGAATTAATTTCTAATTAAAACGAAACAAGTTTCAGATGCTCATGAAAGCAAAT-CATTATC
317 TTTCGAATTAATTTATAATTAAAACGAAACAAGTTTCAGATGCTCATAAAAGCAAATCCA-TATC
* **
191244 TCGAATGTGGCTGAA-ATTTGGTTCGATGAATACAAATAATTCAAGGAGTCGCAGTGCCAAAAAT
381 TCCAATGT-AATGAAGATTTGGTTCGATGAATAC-AAT-A-TCAAGGAGTCGCAGTGCCAAAAAT
*
191308 CAGGCAAAAACTGAGCCGGGGTTCCGGAACGCGTTTTTTTGCCAAAAACAAAAAAT-C-TGACCC
442 CAGGC-AAAACTGAGACGGGGTTCCGGAACGCG--TTTTT-------ACAAAAAATCCGTGA--C
* **
191371 GAAAACGGTAGTAC-ACTTCGGCTAAAATTTTGTAAAGTCTGACCCGAAAACGTTTTCCTC-TAT
495 GAAAA--GTA-TACGACTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAAC-TTTTCCTCATAT
* *
191434 TTTTTGCCACAATA-GA-AAAAAAATTATAATTCAACGAAAAAAAATTGAAGGGTTTTTCAGGCT
556 TTTTTGCCAAAATACCAGAAAAAAATTATAATTCAACGAAAAAAAATTGAAGGGTTTTTCAGGCT
* *
191497 TCTAATATCATTTTCCCATTTTTTCCT
621 TCTAAAATCATTTT-CCA-TTTTCCCT
* *
191524 -AA-TT-TTT-T-ATTAAATCGAAACAAGATTCAGATACTCG-AAAAGAAAATTCTTAAATCCAA
1 GAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAA-AAAA-CCTTAAATCCAA
* * * *
191583 TGTGATTGATATTTGGTTAGATGAATATAGATTTTTCAAGGAGTCTTCCTGACAAAAATCATGCA
64 TCTG-TTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCA
* * ** * *
191648 AAATTGAGCCCGGGCCCCGAAACGCGTTTTTAGCCTAAAAACCGTGATGACTAGTACACGAATCC
128 AAACTGAG-CCGGGCCCCAAAACGCGTTTTTAGCAAAAAAACCGTGATAACTAGTAAACGAATCC
* * * * *
191713 GGCTAAAAACTGTCCCGAAAAGTTTTTTTTTCNGAATTTTTTGCAACAATACTTAGAAAAAAATA
192 GACTAAAAACTGACCCGAAAAG-TTTTTTTCCTGAATTTTTTGCAACAATACTCAGAAAAAAATA
* * * *
191778 TATAATTCAACGGCAAGAAGATTAATGAGCTTTTAAGCTTCTAATATCGTTTTTCCCTTGTTTTT
256 TATAATTCAACGACAAGAAGATTAATCAGCTTTTAAGCTTCTAATATCGTTTTTCCATTGTTTTC
* * * *
191843 TATTTAATTTATAATTAAATCGAAACAAGTTTCAGATGCTCATAAAAGCCAATCCATATCTCCAA
321 GAATTAATTTATAATTAAAACGAAACAAGTTTCAGATGCTCATAAAAGCAAATCCATATCTCCAA
* * ** * ** *
191908 TGTAATTAAGATTTGGTTTGATGAATACGGTATGAAGGAGTCGTTGTGCCAAAAATCATGCAAAA
386 TGTAATGAAGATTTGGTTCGATGAATACAATATCAAGGAGTCGCAGTGCCAAAAATCAGGCAAAA
* ** * * *** *
191973 CTGAGATGGGGTTCCGGAACGCGTTTTTAGTAGAAATCCGTGATGGTTAGTATACGATTTCGGCT
451 CTGAGACGGGGTTCCGGAACGCGTTTTTACAAAAAATCCGTGACGAAAAGTATACGACTTCGGCT
*
192038 AAAATTTTGCAAAAACTGACCCGAAAACTTTTCCTCAAATTTTTTTTGCCAAAATACTCAGAAAA
516 AAAATTTTGCAAAAACTGACCCGAAAACTTTTCCTC--ATATTTTTTGCCAAAATAC-CAGAAAA
* *
192103 AATTTATAATTCAACGCAAAAAAATTGAAGGGTTTTTCAGGCTTCTAAAATCATTTTCCATTTTC
578 AAATTATAATTCAACGAAAAAAAATTGAAGGGTTTTTCAGGCTTCTAAAATCATTTTCCATTTTC
192168 CCT
643 CCT
**
192171 GAATTTATTTCTAATTAAATCGAAACAAGATTTTGATGCTCGTAAAACCAAAACCTTAAATCCAA
1 GAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAA--AAAACCTTAAATCCAA
* * * * * *
192236 TCTCGCTGATATTTGGTTAGACGGATATAGATATTTCAAGGAGTATTTCTGCCAAAATTCATACA
64 TCT-GTTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCA
192301 AAACTGAGCCGTGGCCCCAAAACGCGTTTTTAGC
128 AAACTGAGCCG-GGCCCCAAAACGCGTTTTTAGC
192335 CCAAAAACTA
Statistics
Matches: 688, Mismatches: 92, Indels: 71
0.81 0.11 0.08
Matches are distributed among these distances:
643 11 0.02
644 36 0.05
646 23 0.03
647 8 0.01
648 9 0.01
649 60 0.09
650 3 0.00
651 1 0.00
652 29 0.04
653 101 0.15
654 5 0.01
655 36 0.05
656 155 0.23
657 28 0.04
658 57 0.08
659 119 0.17
660 5 0.01
661 2 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (645 bp):
GAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAAAACCTTAAATCCAATC
TGTTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAA
CTGAGCCGGGCCCCAAAACGCGTTTTTAGCAAAAAAACCGTGATAACTAGTAAACGAATCCGACT
AAAAACTGACCCGAAAAGTTTTTTTCCTGAATTTTTTGCAACAATACTCAGAAAAAAATATATAA
TTCAACGACAAGAAGATTAATCAGCTTTTAAGCTTCTAATATCGTTTTTCCATTGTTTTCGAATT
AATTTATAATTAAAACGAAACAAGTTTCAGATGCTCATAAAAGCAAATCCATATCTCCAATGTAA
TGAAGATTTGGTTCGATGAATACAATATCAAGGAGTCGCAGTGCCAAAAATCAGGCAAAACTGAG
ACGGGGTTCCGGAACGCGTTTTTACAAAAAATCCGTGACGAAAAGTATACGACTTCGGCTAAAAT
TTTGCAAAAACTGACCCGAAAACTTTTCCTCATATTTTTTGCCAAAATACCAGAAAAAAATTATA
ATTCAACGAAAAAAAATTGAAGGGTTTTTCAGGCTTCTAAAATCATTTTCCATTTTCCCT
Done.