Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014468.1 Corchorus capsularis cultivar CVL-1 contig14489, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129004

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12560--12606
22
2.1
23
88
4
69
59
6
2
31
1.34
12571--12620
22
2.3
22
82
6
57
62
4
2
32
1.25
12637--12727
32
2.8
33
85
3
114
10
35
32
20
1.88
21041--21076
17
2.1
17
94
0
63
47
22
2
27
1.65
39331--39379
2
24.0
2
85
8
64
51
2
2
44
1.24
40802--40831
3
10.0
3
100
0
60
33
33
0
33
1.58
42617--42657
21
2.0
21
85
9
57
24
7
19
48
1.74
68955--69294
168
2.0
168
94
0
590
40
16
16
26
1.89
72786--72837
20
2.6
20
96
0
95
25
32
21
21
1.98
73355--73542
95
2.0
92
96
3
349
39
20
16
23
1.92
93101--93131
14
2.2
14
100
0
62
12
22
25
38
1.90
105114--105141
13
2.2
13
100
0
56
35
7
25
32
1.83
109484--109528
21
2.2
21
88
4
65
37
13
8
40
1.76
109976--110037
30
2.1
30
84
0
79
50
8
16
25
1.72
111620--112103
237
2.0
242
91
4
793
34
9
13
43
1.76
118872--118959
45
2.0
45
95
0
158
35
20
19
25
1.96
119015--119346
167
2.0
167
85
2
443
29
13
17
39
1.88
123245--123383
69
2.0
69
88
0
206
22
21
14
41
1.89

Tables:   1

The End!