Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014470.1 Corchorus capsularis cultivar CVL-1 contig14491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116929

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
614--652
19
2.1
19
85
0
51
23
28
10
38
1.87
974--1974
201
5.0
201
85
4
1237
34
12
18
34
1.89
20234--20276
21
2.1
20
82
4
50
37
9
23
30
1.86
23872--23935
27
2.3
27
97
2
119
54
7
28
9
1.60
29071--29135
22
3.0
22
88
0
94
13
20
40
26
1.89
33028--33069
22
1.9
22
100
0
84
16
23
38
21
1.93
33220--33284
22
3.0
22
86
0
94
15
21
38
24
1.92
37146--37177
2
16.0
2
100
0
64
50
0
0
50
1.00
55967--56000
2
17.0
2
100
0
68
50
0
0
50
1.00
59781--59883
53
1.9
53
98
0
197
41
10
7
39
1.69
63299--63364
26
2.5
26
82
4
80
15
13
40
30
1.85
63428--63552
23
5.4
23
79
3
144
16
16
42
25
1.87
63429--63556
46
2.8
46
89
0
184
14
17
42
25
1.87
68401--68476
39
2.0
38
85
12
102
13
14
9
63
1.52
69202--69278
22
3.5
22
76
3
75
36
16
7
38
1.78
69304--69447
22
6.6
21
70
8
81
34
11
9
43
1.74
69305--69447
66
2.2
66
82
5
164
34
11
9
44
1.73
71528--71553
2
13.0
2
100
0
52
50
0
0
50
1.00
72573--72598
2
13.0
2
100
0
52
50
0
0
50
1.00
84860--84890
16
1.9
16
93
0
53
16
3
25
54
1.56
86861--86890
11
2.7
11
94
0
51
23
26
26
23
2.00
87197--87249
26
2.0
25
82
13
63
41
5
3
49
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96651--96693
21
2.0
21
100
0
86
32
4
23
39
1.75
100003--100031
14
2.1
14
100
0
58
27
6
31
34
1.83
102682--102978
109
2.7
110
89
6
431
49
2
11
37
1.50
106606--106633
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!