Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014471.1 Corchorus capsularis cultivar CVL-1 contig14492, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79005

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13231--13304
20
3.5
20
77
16
78
5
45
2
45
1.40
13227--13306
24
3.5
23
68
19
69
5
45
2
47
1.38
13980--14051
33
2.2
33
85
2
92
13
31
37
16
1.88
13995--14081
33
2.7
33
85
5
106
13
33
35
17
1.89
18700--18852
78
2.0
78
96
0
279
20
28
13
37
1.91
19850--19959
28
3.7
30
82
6
134
41
12
21
23
1.88
21054--21112
23
2.7
21
80
15
66
44
8
1
45
1.44
56428--56506
21
3.5
21
76
18
86
24
8
24
43
1.82
56413--56506
48
2.0
48
97
0
179
27
7
24
40
1.82
56413--56489
27
3.1
27
73
21
94
28
6
25
38
1.81
59554--59613
31
1.9
32
93
3
104
30
18
3
48
1.64
59850--59923
22
3.4
21
75
14
60
44
9
13
32
1.76
59986--60065
23
3.5
23
80
8
92
35
8
17
38
1.81
60032--60147
44
2.6
43
75
15
112
34
12
14
38
1.83
60213--60263
22
2.3
21
80
9
57
50
9
13
25
1.72
60068--60824
379
2.0
377
93
1
1284
38
12
14
34
1.84
60542--60713
22
7.9
22
70
10
93
43
9
13
33
1.77
60680--60727
22
2.2
22
81
7
53
52
8
10
29
1.65
62499--62534
6
6.0
6
96
0
63
52
13
33
0
1.41
64739--64805
32
2.3
31
76
21
72
1
14
7
76
1.08
67125--67174
24
2.1
23
85
10
66
54
16
0
30
1.42
67548--67589
18
2.4
19
80
15
54
42
11
0
45
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67347--67643
110
2.7
110
89
5
436
37
10
1
50
1.48
75634--75698
31
2.1
31
94
0
112
41
23
15
20
1.89
76770--76869
23
4.2
23
69
18
71
40
20
6
34
1.77
77134--77252
59
2.0
59
100
0
238
30
21
10
37
1.87

Tables:   1

The End!