Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014475.1 Corchorus capsularis cultivar CVL-1 contig14496, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24669
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:449 original size:133 final size:133
Alignment explanation
Indices: 211--473 Score: 490
Period size: 133 Copynumber: 2.0 Consensus size: 133
201 TCTTTGTTCA
211 TGCGTTTTGATGTTATTTTACTTGAATGATTTTGAATGATTGAGTTTTGAAAGTTTGAAGGTTGA
1 TGCGTTTTGATGTTATTTTACTTGAATGATTTTGAATGATTGAGTTTTGAAAGTTTGAAGGTTGA
*
276 GAGAATTTGAGAGAATTGAAAGGTTTGAAGTTTGATGAAAAATATAGCAAAGGGCAAAATAGTCC
66 GAGAATTTGAGAGAATTGAAAGGTTTGAAGTTTGATGAAAAATATAACAAAGGGCAAAATAGTCC
341 CTT
131 CTT
* *
344 TGCGTTTTGATGTTGTTTTATTTGAATGATTTTGAATGATTGAGTTTTGAAAGTTTGAAGGTTGA
1 TGCGTTTTGATGTTATTTTACTTGAATGATTTTGAATGATTGAGTTTTGAAAGTTTGAAGGTTGA
*
409 GAGAATTTGAGAGAATTGAAAGGTTTGAAGTTTGATGAAAAATATAATAAAGGGCAAAATAGTCC
66 GAGAATTTGAGAGAATTGAAAGGTTTGAAGTTTGATGAAAAATATAACAAAGGGCAAAATAGTCC
474 AAAAGAGGGG
Statistics
Matches: 126, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 126 1.00
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.37
Consensus pattern (133 bp):
TGCGTTTTGATGTTATTTTACTTGAATGATTTTGAATGATTGAGTTTTGAAAGTTTGAAGGTTGA
GAGAATTTGAGAGAATTGAAAGGTTTGAAGTTTGATGAAAAATATAACAAAGGGCAAAATAGTCC
CTT
Done.