Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014482.1 Corchorus capsularis cultivar CVL-1 contig14503, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40360

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18--46
2
14.5
2
100
0
58
48
0
0
51
1.00
4310--4373
21
3.2
20
77
8
76
32
20
10
35
1.87
7015--7181
83
2.0
83
94
2
291
26
25
8
40
1.84
12078--12109
15
2.1
16
88
11
50
18
25
3
53
1.59
15522--15546
13
1.9
13
100
0
50
40
0
12
48
1.40
15816--15879
31
2.1
30
82
8
76
28
40
7
23
1.82
20650--20707
29
2.0
29
93
3
98
55
1
0
43
1.10
20729--20854
62
2.0
63
93
1
218
30
18
10
40
1.84
21483--21702
114
1.9
114
98
0
422
38
7
21
32
1.81
24283--24324
21
2.0
21
86
9
59
30
16
2
50
1.58
29223--29259
10
3.6
10
89
7
56
32
13
16
37
1.87
35584--35626
22
2.0
22
95
0
77
34
34
16
13
1.88
36576--37115
20
26.6
20
77
9
470
26
16
24
32
1.96
36575--37110
61
8.8
61
84
5
563
26
16
24
32
1.96
37496--37547
26
2.0
26
88
0
77
28
13
15
42
1.85
37646--37698
24
2.2
25
89
3
81
28
18
11
41
1.85
37937--37967
4
7.5
4
92
7
53
25
0
0
74
0.82
37937--37967
13
2.5
12
94
5
53
25
0
0
74
0.82

Tables:   1

The End!