Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014487.1 Corchorus capsularis cultivar CVL-1 contig14508, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49281

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1908--1934
14
1.9
14
100
0
54
66
7
14
11
1.43
20482--20508
5
5.4
5
100
0
54
59
0
0
40
0.98
21141--21364
114
1.9
114
83
8
285
37
13
12
36
1.83
21643--21677
18
1.9
18
88
11
54
31
22
0
45
1.53
22900--22977
40
2.0
39
89
2
120
39
15
15
29
1.88
24894--24921
3
9.3
3
100
0
56
35
32
0
32
1.58
32270--32299
1
30.0
1
93
0
51
0
3
0
96
0.21
32408--32439
2
16.0
2
100
0
64
50
0
0
50
1.00
33664--33704
2
22.0
2
80
14
52
46
0
2
51
1.14
33664--33704
9
4.4
10
82
14
52
46
0
2
51
1.14
34064--34096
2
17.0
2
93
6
59
48
0
0
51
1.00
35136--35188
21
2.5
20
70
8
52
18
35
18
26
1.95
40839--41197
180
2.0
177
92
2
594
26
12
14
46
1.80
41815--41846
15
2.1
15
100
0
64
59
12
12
15
1.61
42285--42316
2
16.5
2
93
6
57
50
0
0
50
1.00
42263--42314
16
3.4
16
82
15
65
48
0
1
50
1.12
42666--42694
2
14.5
2
100
0
58
48
0
0
51
1.00
43047--43100
24
2.2
25
80
9
67
48
5
31
14
1.67
43815--43915
27
3.7
27
81
5
125
42
9
35
11
1.75
48095--48155
25
2.5
26
84
12
85
32
24
0
42
1.55
48163--48230
26
2.6
26
95
0
118
52
11
1
33
1.47
48163--48230
15
5.1
15
70
26
62
52
11
1
33
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48491--48531
21
2.0
21
95
0
73
21
4
51
21
1.67

Tables:   1

The End!