genome.fa.s14496.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014496.1 Corchorus capsularis cultivar CVL-1 contig14517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176859

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2002--2051	24	2.0	25	84	3	66	68	2	2	28	1.12
2442--2471	2	15.5	2	93	6	53	50	0	0	50	1.00
2574--2753	93	1.9	92	87	1	261	26	19	11	42	1.84
3737--3869	66	2.0	66	97	0	248	26	19	30	24	1.98
4031--4082	25	2.1	25	100	0	104	26	3	11	57	1.51
10647--10706	25	2.4	25	72	10	59	13	10	15	61	1.56
10907--10950	21	2.1	21	91	0	70	18	40	9	31	1.81
11037--11062	10	2.6	10	100	0	52	30	30	0	38	1.58
11099--11166	26	2.6	26	90	0	109	54	10	1	33	1.43
11099--11216	52	2.4	51	79	13	122	54	10	1	33	1.44
11481--11526	21	2.1	22	84	4	58	39	8	39	13	1.75
12307--12352	15	3.1	15	84	12	51	26	2	4	67	1.21
15968--16411	167	2.7	165	87	3	622	39	16	14	29	1.89
17362--17398	19	2.0	18	89	5	56	40	8	21	29	1.82
19249--19405	74	2.1	74	90	0	242	42	10	28	19	1.84
20985--21062	31	2.5	31	82	4	93	35	25	23	15	1.94
21777--21829	26	2.1	26	82	10	65	41	7	1	49	1.42
23545--23579	18	1.9	18	100	0	70	28	17	8	45	1.77
24558--24584	2	13.5	2	100	0	54	48	0	0	51	1.00
64862--64890	3	9.7	3	100	0	58	34	0	34	31	1.58
79467--79503	17	2.1	19	90	10	60	64	5	16	13	1.45
112018--112287	134	2.0	134	88	5	404	28	22	12	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120671--120712	22	2.0	21	85	4	57	78	4	14	2	1.01
134036--134186	72	2.1	72	81	4	180	44	26	6	22	1.77
141425--141457	13	2.4	14	90	10	50	27	0	3	69	1.03
142535--142566	2	16.0	2	100	0	64	50	0	0	50	1.00
142929--143522	308	1.9	310	81	3	714	38	14	13	32	1.86
146450--147050	308	1.9	310	81	4	721	36	14	13	34	1.86
147803--147832	15	1.9	16	93	6	53	53	3	0	43	1.17
152662--152705	21	2.2	20	87	4	61	36	4	2	56	1.32
152785--152828	21	2.2	20	83	4	52	34	4	4	56	1.40
157112--157196	41	2.0	43	95	4	156	45	7	4	42	1.52
158077--160482	329	7.3	331	78	6	1910	37	15	13	33	1.87
158250--160482	667	3.4	656	77	7	2054	37	16	13	33	1.87
158922--160109	321	3.6	317	78	8	884	37	17	12	32	1.87
161101--161468	106	3.5	107	92	2	584	41	9	8	39	1.68
163678--163751	38	1.9	38	94	0	130	35	18	16	29	1.93
165298--165322	13	1.9	13	100	0	50	40	0	24	36	1.55
168237--168679	166	2.7	166	85	2	577	40	16	13	29	1.87
176546--176629	41	2.0	41	90	0	132	42	17	10	28	1.83

Tables:   1

The End!