Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014497.1 Corchorus capsularis cultivar CVL-1 contig14518, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5531
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:2137 original size:104 final size:104

Alignment explanation


    Indices: 1952--2146  Score: 275
    Period size: 104  Copynumber: 1.9  Consensus size: 104

       1942 CAATCTTTGA

                                   *                    *                  * 
       1952 CTGTCAACACTGCCACTTTTTCAGAGTGAAGACTTGGAGTTTTAGTCGATTAATACCAAAACTCA
          1 CTGTCAACACTGCCACTTTTTCAAAGTGAAGACTTGGAGTTTTACTCGATTAATACCAAAACTAA

                 *            *                    
       2017 AACTGGAGTTTTCATCGATTAATACTGCCTCCGGGTTCG
         66 AACTGAAGTTTTCATCGACTAATACTGCCTCCGGGTTCG

                *                *                                   ***  *  
       2056 CTGTTAACACTGCCACTTTTTTAAAGAT-AAGACTTGGAGTTTTACTCGATTAATACTGGAATTA
          1 CTGTCAACACTGCCACTTTTTCAAAG-TGAAGACTTGGAGTTTTACTCGATTAATACCAAAACTA

                                       
       2120 AAACTGAAGTTTTCATCGACTAATACT
         65 AAACTGAAGTTTTCATCGACTAATACT

       2147 TTTCTGACAG


Statistics
Matches: 79,  Mismatches: 11, Indels: 2
        0.86            0.12        0.02

Matches are distributed among these distances:
 104   78  0.99
 105    1  0.01

ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Consensus pattern (104 bp):   
CTGTCAACACTGCCACTTTTTCAAAGTGAAGACTTGGAGTTTTACTCGATTAATACCAAAACTAA
AACTGAAGTTTTCATCGACTAATACTGCCTCCGGGTTCG
Done.