Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014510.1 Corchorus capsularis cultivar CVL-1 contig14531, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 213783
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:3521 original size:16 final size:17
Alignment explanation
Indices: 3500--3534 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
3490 AAAACTTTTT
3500 TTTTTTTGTAAAA-TCA
1 TTTTTTTGTAAAAGTCA
*
3516 TTTTTTTTTAAAAGTCA
1 TTTTTTTGTAAAAGTCA
3533 TT
1 TT
3535 GTATTGATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.60
Consensus pattern (17 bp):
TTTTTTTGTAAAAGTCA
Found at i:3521 original size:17 final size:17
Alignment explanation
Indices: 3499--3534 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
3489 TAAAACTTTT
3499 TTTTTTTTGTAAAA-TCA
1 TTTTTTTT-TAAAAGTCA
3516 TTTTTTTTTAAAAGTCA
1 TTTTTTTTTAAAAGTCA
3533 TT
1 TT
3535 GTATTGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (17 bp):
TTTTTTTTTAAAAGTCA
Found at i:3869 original size:2 final size:2
Alignment explanation
Indices: 3862--3887 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3852 GTATTTTGTG
3862 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3888 GGTAATAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4530 original size:16 final size:16
Alignment explanation
Indices: 4509--4543 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
4499 TCCATGGACA
4509 TAATTAATTATT-TAAT
1 TAATT-ATTATTGTAAT
4525 TAATTATTATTGTAAT
1 TAATTATTATTGTAAT
4541 TAA
1 TAA
4544 ATAAAGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (16 bp):
TAATTATTATTGTAAT
Found at i:14877 original size:2 final size:2
Alignment explanation
Indices: 14870--14902 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14860 AATCTTCAAC
14870 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14903 CTAAGACCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18004 original size:2 final size:2
Alignment explanation
Indices: 17997--18033 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
17987 TTATCTCTGA
17997 AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18034 TCTGATAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:18022 original size:17 final size:17
Alignment explanation
Indices: 18000--18034 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
17990 TCTCTGAATA
18000 TATATATATATATATAT
1 TATATATATATATATAT
18017 TATATATATATATATAT
1 TATATATATATATATAT
18034 T
1 T
18035 CTGATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATATATATATATAT
Found at i:27295 original size:21 final size:22
Alignment explanation
Indices: 27262--27302 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
27252 AACATGTGAA
* *
27262 AAATCTT-TTTTTTTTTAATTT
1 AAATCTTGGTTTTATTTAATTT
27283 AAATCTTGGTTTTATTTAAT
1 AAATCTTGGTTTTATTTAAT
27303 GTATTATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (22 bp):
AAATCTTGGTTTTATTTAATTT
Found at i:31854 original size:17 final size:17
Alignment explanation
Indices: 31832--31867 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
31822 AATTGGTTTG
*
31832 TTTATTAGGGAAGGGGT
1 TTTATTAGGGAAAGGGT
31849 TTTATTAGGGAAAGGGT
1 TTTATTAGGGAAAGGGT
31866 TT
1 TT
31868 GTTGACTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (17 bp):
TTTATTAGGGAAAGGGT
Found at i:36460 original size:1 final size:1
Alignment explanation
Indices: 36454--36484 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
36444 TAATGCTGAG
36454 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
36485 AATGTTGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:46778 original size:57 final size:57
Alignment explanation
Indices: 46694--46914 Score: 268
Period size: 57 Copynumber: 3.9 Consensus size: 57
46684 AAAACAGCAA
* *
46694 CAACAATGAAAATGCAGGTCCGAATGAGAATAATGCTGCTCAGAGCTACACAGACAG
1 CAACAATGAAAATGCAAGTCAGAATGAGAATAATGCTGCTCAGAGCTACACAGACAG
* * *
46751 CAACAACGAGAATGCAAGTCAGAATGAGAATAATGCTTCTCAGAGCTACACAGACAG
1 CAACAATGAAAATGCAAGTCAGAATGAGAATAATGCTGCTCAGAGCTACACAGACAG
* * * *
46808 CAACAATGAGAATGCAAGTCAGAATGAGAACAATGATGCTGCTCAGAGC-A-ACA-CCAA
1 CAACAATGAAAATGCAAGTCAGAATGAG---AATAATGCTGCTCAGAGCTACACAGACAG
** * * *
46865 CAACAATGAAAACACAAGTCAGAATGAGAACAATGATGCTCAGACCTACA
1 CAACAATGAAAATGCAAGTCAGAATGAGAATAATGCTGCTCAGAGCTACA
46915 TTAATGAAAA
Statistics
Matches: 142, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
54 14 0.10
55 1 0.01
56 1 0.01
57 106 0.75
58 3 0.02
59 1 0.01
60 16 0.11
ACGTcount: A:0.43, C:0.21, G:0.20, T:0.15
Consensus pattern (57 bp):
CAACAATGAAAATGCAAGTCAGAATGAGAATAATGCTGCTCAGAGCTACACAGACAG
Found at i:50770 original size:26 final size:24
Alignment explanation
Indices: 50724--50996 Score: 235
Period size: 26 Copynumber: 11.8 Consensus size: 24
50714 CCCGAGTAAC
*
50724 GTAACGTTTGTGAT-ATTTTCTAA
1 GTAACGTATGTGATGATTTTCTAA
50747 GTAACGTATGTGATGATGCTTTCTAA
1 GTAACGTATGTGATGAT--TTTCTAA
50773 GTAACGTATGTGATG-TTTTCTAA
1 GTAACGTATGTGATGATTTTCTAA
*
50796 GAAACGTA--TG-TGA-----TAA
1 GTAACGTATGTGATGATTTTCTAA
50812 GTAACGTATGTGATGATACTTTCTAA
1 GTAACGTATGTGATGAT--TTTCTAA
50838 GTAACGTATGTGATG-TTTTCTAA
1 GTAACGTATGTGATGATTTTCTAA
*
50861 GAAACGTA--TG-TGA-----TAA
1 GTAACGTATGTGATGATTTTCTAA
*
50877 GTAACGCATGTGATGATGCTTTCTAA
1 GTAACGTATGTGATGAT--TTTCTAA
* *
50903 GTGATGTATGTGATG-TTTTCTAA
1 GTAACGTATGTGATGATTTTCTAA
*
50926 GAAACGTATGTGATGATATTTTCTAA
1 GTAACGTATGTGATG--ATTTTCTAA
*
50952 GTAACGTATGAGATGATGTTTTCTAA
1 GTAACGTATGTGATGA--TTTTCTAA
*
50978 GTAACGTGTGTGATGATTT
1 GTAACGTATGTGATGATTT
50997 CTAGGAGACA
Statistics
Matches: 204, Mismatches: 16, Indels: 59
0.73 0.06 0.21
Matches are distributed among these distances:
16 19 0.09
18 4 0.02
19 6 0.03
20 4 0.02
21 4 0.02
23 60 0.29
24 6 0.03
25 3 0.01
26 98 0.48
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (24 bp):
GTAACGTATGTGATGATTTTCTAA
Found at i:50779 original size:49 final size:47
Alignment explanation
Indices: 50724--50996 Score: 227
Period size: 49 Copynumber: 5.9 Consensus size: 47
50714 CCCGAGTAAC
*
50724 GTAACGTTTGTGATATTTTCTAAGTAACGTATGTGATGATGCTTTCTAA
1 GTAACGTATGTGATATTTTCTAAGTAACGTATGTGATGAT--TTTCTAA
* *
50773 GTAACGTATGTGATGTTTTCTAAGAAACGTA--TG-TGA-----TAA
1 GTAACGTATGTGATATTTTCTAAGTAACGTATGTGATGATTTTCTAA
50812 GTAACGTATGTGATGATACTTTCTAAGTAACGTATGTGATG-TTTTCTAA
1 GTAACGTATGTGAT-AT--TTTCTAAGTAACGTATGTGATGATTTTCTAA
* *
50861 GAAACGTATGTG--A-----TAAGTAACGCATGTGATGATGCTTTCTAA
1 GTAACGTATGTGATATTTTCTAAGTAACGTATGTGATGAT--TTTCTAA
* * * *
50903 GTGATGTATGTGATGTTTTCTAAGAAACGTATGTGATGATATTTTCTAA
1 GTAACGTATGTGATATTTTCTAAGTAACGTATGTGATG--ATTTTCTAA
* *
50952 GTAACGTATGAGATGATGTTTTCTAAGTAACGTGTGTGATGATTT
1 GTAACGTAT--G-TGATATTTTCTAAGTAACGTATGTGATGATTT
50997 CTAGGAGACA
Statistics
Matches: 181, Mismatches: 17, Indels: 51
0.73 0.07 0.20
Matches are distributed among these distances:
39 34 0.19
40 2 0.01
42 30 0.17
44 2 0.01
45 2 0.01
46 4 0.02
47 2 0.01
49 72 0.40
50 4 0.02
51 3 0.02
52 26 0.14
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (47 bp):
GTAACGTATGTGATATTTTCTAAGTAACGTATGTGATGATTTTCTAA
Found at i:50817 original size:16 final size:16
Alignment explanation
Indices: 50793--50825 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50783 TGATGTTTTC
50793 TAAGAAACGTATGTGA
1 TAAGAAACGTATGTGA
*
50809 TAAGTAACGTATGTGA
1 TAAGAAACGTATGTGA
50825 T
1 T
50826 GATACTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.30
Consensus pattern (16 bp):
TAAGAAACGTATGTGA
Found at i:50824 original size:39 final size:41
Alignment explanation
Indices: 50770--50851 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 41
50760 TGATGCTTTC
50770 TAAGTAACGTATGTGATG-T-TTTCTAAGAAACGTATGTGA
1 TAAGTAACGTATGTGATGATATTTCTAAGAAACGTATGTGA
*
50809 TAAGTAACGTATGTGATGATACTTTCTAAGTAACGTATGTGA
1 TAAGTAACGTATGTGATGATA-TTTCTAAGAAACGTATGTGA
50851 T
1 T
50852 GTTTTCTAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
39 18 0.46
40 1 0.03
42 20 0.51
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.37
Consensus pattern (41 bp):
TAAGTAACGTATGTGATGATATTTCTAAGAAACGTATGTGA
Found at i:50848 original size:65 final size:65
Alignment explanation
Indices: 50744--50939 Score: 356
Period size: 65 Copynumber: 3.0 Consensus size: 65
50734 TGATATTTTC
50744 TAAGTAACGTATGTGATGATGCTTTCTAAGTAACGTATGTGATGTTTTCTAAGAAACGTATGTGA
1 TAAGTAACGTATGTGATGATGCTTTCTAAGTAACGTATGTGATGTTTTCTAAGAAACGTATGTGA
*
50809 TAAGTAACGTATGTGATGATACTTTCTAAGTAACGTATGTGATGTTTTCTAAGAAACGTATGTGA
1 TAAGTAACGTATGTGATGATGCTTTCTAAGTAACGTATGTGATGTTTTCTAAGAAACGTATGTGA
* * *
50874 TAAGTAACGCATGTGATGATGCTTTCTAAGTGATGTATGTGATGTTTTCTAAGAAACGTATGTGA
1 TAAGTAACGTATGTGATGATGCTTTCTAAGTAACGTATGTGATGTTTTCTAAGAAACGTATGTGA
50939 T
1 T
50940 GATATTTTCT
Statistics
Matches: 126, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 126 1.00
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (65 bp):
TAAGTAACGTATGTGATGATGCTTTCTAAGTAACGTATGTGATGTTTTCTAAGAAACGTATGTGA
Found at i:55441 original size:63 final size:62
Alignment explanation
Indices: 55343--55465 Score: 219
Period size: 63 Copynumber: 2.0 Consensus size: 62
55333 TCCCAAAAGG
* *
55343 CGTGTTATTACTAGTCATCCCATGTTTTGTAGTAAAACTTCATTTAAATAGTGATGAGATGA
1 CGTGTTATTACTAGTCATCCCATGTTTTGTAGTAAAACTTCACTTAAATAGTGATAAGATGA
55405 CGTGTTATTACTAGTCATTCCCATGTTTTGTAGTAAAACTTCACTTAAATAGTGATAAGAT
1 CGTGTTATTACTAGTCA-TCCCATGTTTTGTAGTAAAACTTCACTTAAATAGTGATAAGAT
55466 CAGTCTGCTA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
62 17 0.29
63 41 0.71
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (62 bp):
CGTGTTATTACTAGTCATCCCATGTTTTGTAGTAAAACTTCACTTAAATAGTGATAAGATGA
Found at i:56567 original size:11 final size:12
Alignment explanation
Indices: 56545--56591 Score: 51
Period size: 11 Copynumber: 3.9 Consensus size: 12
56535 CAACTAAAAA
56545 TAGTAGTACTAC
1 TAGTAGTACTAC
56557 TAGTA-TACTAC
1 TAGTAGTACTAC
* * *
56568 TACTACTTACTAT
1 TAGTA-GTACTAC
56581 TAGTAGTACTA
1 TAGTAGTACTA
56592 ATAAATTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 10 0.34
12 10 0.34
13 9 0.31
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (12 bp):
TAGTAGTACTAC
Found at i:63472 original size:28 final size:28
Alignment explanation
Indices: 63440--63493 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
63430 GACGCAGTTT
*
63440 AATACTATAGAGCAAGTTGCTATTTTGA
1 AATACTATAGAGCAAGTTGCCATTTTGA
63468 AATACTATAGAGCAAGTTGCCATTTT
1 AATACTATAGAGCAAGTTGCCATTTT
63494 TTATCACAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (28 bp):
AATACTATAGAGCAAGTTGCCATTTTGA
Found at i:72308 original size:42 final size:42
Alignment explanation
Indices: 72249--72329 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
72239 AGAATAGTGT
**
72249 TAACGTGTTGTATTTTGATGACGATTTAAGAAAAATGAACGA
1 TAACGTGCCGTATTTTGATGACGATTTAAGAAAAATGAACGA
*
72291 TAACGTGCCGTATTTTGATGACGATTTCAGAAAAATGAA
1 TAACGTGCCGTATTTTGATGACGATTTAAGAAAAATGAA
72330 ATTTTTGACG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (42 bp):
TAACGTGCCGTATTTTGATGACGATTTAAGAAAAATGAACGA
Found at i:72464 original size:33 final size:33
Alignment explanation
Indices: 72377--72487 Score: 106
Period size: 33 Copynumber: 3.4 Consensus size: 33
72367 CCCAAGAGGG
* *
72377 CGGCTT-ACCGTGGCCAAGCCGCCCCACTTGGGA
1 CGGCTTCACCATGGGCAAGCCGCCCCAC-TGGGA
*
72410 -GGC-TCAACCA-CGGCGAAGCCGCCCCACTGGGA
1 CGGCTTC-ACCATGGGC-AAGCCGCCCCACTGGGA
*
72442 CGGCTTCACCATGGGCAGGCCGCCCCACTAGGG-
1 CGGCTTCACCATGGGCAAGCCGCCCCACT-GGGA
*
72475 CGGTTTCACCATG
1 CGGCTTCACCATG
72488 AAAAGCTTAG
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
31 1 0.02
32 10 0.15
33 46 0.71
34 8 0.12
ACGTcount: A:0.17, C:0.39, G:0.31, T:0.14
Consensus pattern (33 bp):
CGGCTTCACCATGGGCAAGCCGCCCCACTGGGA
Found at i:72734 original size:21 final size:21
Alignment explanation
Indices: 72710--72750 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72700 GCAAAGTGTA
* *
72710 AAAAATGGGGCGATATTTAGC
1 AAAAATAGGACGATATTTAGC
*
72731 AAAACTAGGACGATATTTAG
1 AAAAATAGGACGATATTTAG
72751 TAAATTCATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (21 bp):
AAAAATAGGACGATATTTAGC
Found at i:73081 original size:74 final size:74
Alignment explanation
Indices: 73003--73147 Score: 263
Period size: 74 Copynumber: 2.0 Consensus size: 74
72993 ATTTTTTAGG
* *
73003 TGACTAAAAAGCCCCTCTATGAGTTTCCCCTATTCCTTTTCCTTCTATCCTTTTTCGTAATTACA
1 TGACTAAAAAGCCCCTCTATGAGTTTCCCCCATTCCTTTTCCTTCTACCCTTTTTCGTAATTACA
*
73068 CTTTTCGGA
66 CATTTCGGA
73077 TGACTAAAAAGCCCCTCTATGAGTTTCCCCCATTCCTTTTCCTTCTACCCTTTTTCGTAATTACA
1 TGACTAAAAAGCCCCTCTATGAGTTTCCCCCATTCCTTTTCCTTCTACCCTTTTTCGTAATTACA
73142 CATTTC
66 CATTTC
73148 CCTTCCTTAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.21, C:0.30, G:0.08, T:0.41
Consensus pattern (74 bp):
TGACTAAAAAGCCCCTCTATGAGTTTCCCCCATTCCTTTTCCTTCTACCCTTTTTCGTAATTACA
CATTTCGGA
Found at i:73185 original size:20 final size:21
Alignment explanation
Indices: 73154--73192 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
73144 TTTCCCTTCC
73154 TTAATGGTTTTTAATTAATGT
1 TTAATGGTTTTTAATTAATGT
73175 TTAAT-GTTTTTAATTAAT
1 TTAATGGTTTTTAATTAAT
73193 TGCTTCTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (21 bp):
TTAATGGTTTTTAATTAATGT
Found at i:84355 original size:51 final size:51
Alignment explanation
Indices: 84282--84389 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 51
84272 CACCACTGTC
*
84282 TCTTCTCGTGTACCTTTATGTCTGGCCTCGCCTCACTACGGAGAGCCTCTG
1 TCTTCTCGTGTACCTTCATGTCTGGCCTCGCCTCACTACGGAGAGCCTCTG
* *
84333 TCTTCTCGTGTACCTTCGTGTCTGGTCTCGCCTCACTACGGAGAGCCTCTG
1 TCTTCTCGTGTACCTTCATGTCTGGCCTCGCCTCACTACGGAGAGCCTCTG
84384 TCTTCT
1 TCTTCT
84390 AATTTCTTCG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.10, C:0.33, G:0.21, T:0.35
Consensus pattern (51 bp):
TCTTCTCGTGTACCTTCATGTCTGGCCTCGCCTCACTACGGAGAGCCTCTG
Found at i:84623 original size:127 final size:122
Alignment explanation
Indices: 84450--84749 Score: 361
Period size: 127 Copynumber: 2.4 Consensus size: 122
84440 CTCACTGCTG
* * * * *
84450 TGTCTTCTCGTGCACCTTCACGCCTGGCCTCGCCTCACTGCAGAGAGCCTCCGTCTTC-TCATGT
1 TGTCTTCTCGTGTACCTTTATGTCTGGCCTCGCCTCACTGCGGAGAGCCTCCGTCTTCGT-ATGT
84514 CTTCTCGTGTACCTTCGTGTCCGGCCTCGCCTCACTGCGGAGAGCCTCCGTCTTC-TCA
65 CTTCTCGTGTACCTTCGTGTCCGGCCTCGCCTCACTGCGGAGAGCCTCCGTCTTCGT-A
* * **
84572 TGTCTTCTTGTGTACCTTCGTGTCTGGTCTGGCCTCGCCTCACTGCGGAGAGCCTTTGTCTTCGT
1 TGTCTTCTCGTGTACC-T--T-TAT-GTCTGGCCTCGCCTCACTGCGGAGAGCCTCCGTCTTCGT
* * * * * * *
84637 GTGTTTTCTTGTGTACCTTCGTGTCTGGCCTTGCCTCACTGCGGAGAGCCTCTGTCTTCGTG
61 ATGTCTTCTCGTGTACCTTCGTGTCCGGCCTCGCCTCACTGCGGAGAGCCTCCGTCTTCGTA
* *
84699 TGTCTTCTCGTGTACCTTTATGTCTGGCCTCACCTCATTGCGGAGAGCCTC
1 TGTCTTCTCGTGTACCTTTATGTCTGGCCTCGCCTCACTGCGGAGAGCCTC
84750 TGTATTCTTG
Statistics
Matches: 150, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
122 41 0.27
123 3 0.02
124 1 0.01
125 1 0.01
126 1 0.01
127 101 0.67
128 2 0.01
ACGTcount: A:0.09, C:0.33, G:0.24, T:0.34
Consensus pattern (122 bp):
TGTCTTCTCGTGTACCTTTATGTCTGGCCTCGCCTCACTGCGGAGAGCCTCCGTCTTCGTATGTC
TTCTCGTGTACCTTCGTGTCCGGCCTCGCCTCACTGCGGAGAGCCTCCGTCTTCGTA
Found at i:84750 original size:61 final size:60
Alignment explanation
Indices: 84447--84767 Score: 354
Period size: 61 Copynumber: 5.2 Consensus size: 60
84437 CGCCTCACTG
* * * * *
84447 CTGTGTCTTCTCGTGCACCTTCACGCCTGGCCTCGCCTCACTGCAGAGAGCCTCCGTCTT
1 CTGTGTCTTCTCGTGTACCTTCATGTCTGGCCTCGCCTCACTGCGGAGAGCCTCTGTCTT
* * * *
84507 CTCATGTCTTCTCGTGTACCTTCGTGTCCGGCCTCGCCTCACTGCGGAGAGCCTCCGTCTT
1 CT-GTGTCTTCTCGTGTACCTTCATGTCTGGCCTCGCCTCACTGCGGAGAGCCTCTGTCTT
* * * *
84568 CTCATGTCTTCTTGTGTACCTTCGTGTCTGGTCTGGCCTCGCCTCACTGCGGAGAGCCTTTGTCT
1 CT-GTGTCTTCTCGTGTACCTTC----AT-GTCTGGCCTCGCCTCACTGCGGAGAGCCTCTGTCT
84633 T
60 T
* * * *
84634 CGTGTGTTTTCTTGTGTACCTTCGTGTCTGGCCTTGCCTCACTGCGGAGAGCCTCTGTCTT
1 C-TGTGTCTTCTCGTGTACCTTCATGTCTGGCCTCGCCTCACTGCGGAGAGCCTCTGTCTT
* * * *
84695 CGTGTGTCTTCTCGTGTACCTTTATGTCTGGCCTCACCTCATTGCGGAGAGCCTCTGTATT
1 C-TGTGTCTTCTCGTGTACCTTCATGTCTGGCCTCGCCTCACTGCGGAGAGCCTCTGTCTT
*
84756 CTTGTGTTTTCT
1 C-TGTGTCTTCT
84768 TGTCTTCGCG
Statistics
Matches: 227, Mismatches: 27, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
60 2 0.01
61 170 0.75
62 1 0.00
65 1 0.00
66 52 0.23
67 1 0.00
ACGTcount: A:0.08, C:0.32, G:0.23, T:0.36
Consensus pattern (60 bp):
CTGTGTCTTCTCGTGTACCTTCATGTCTGGCCTCGCCTCACTGCGGAGAGCCTCTGTCTT
Found at i:85362 original size:16 final size:16
Alignment explanation
Indices: 85341--85371 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
85331 TATTATAAGC
85341 TTTGTAAAGGAATGTA
1 TTTGTAAAGGAATGTA
85357 TTTGTAAAGGAATGT
1 TTTGTAAAGGAATGT
85372 GTTTACGGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.39
Consensus pattern (16 bp):
TTTGTAAAGGAATGTA
Found at i:85516 original size:26 final size:29
Alignment explanation
Indices: 85483--85542 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
85473 TTTTAATAAG
*
85483 TATTA-TTTTT-AG-TCATTTAACTTTTT
1 TATTATTTTTTGAGATCATTCAACTTTTT
*
85509 TATTATTTTTTGAGATGATTCAACTTTTT
1 TATTATTTTTTGAGATCATTCAACTTTTT
85538 TATTA
1 TATTA
85543 ATTATGGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 5 0.17
27 5 0.17
28 2 0.07
29 17 0.59
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.62
Consensus pattern (29 bp):
TATTATTTTTTGAGATCATTCAACTTTTT
Found at i:85643 original size:14 final size:15
Alignment explanation
Indices: 85624--85667 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 15
85614 TAAATGTAAT
85624 TAATAATT-TATTTC
1 TAATAATTATATTTC
85638 TAATAATTATATTTC
1 TAATAATTATATTTC
85653 TATTATAA-TATATTT
1 TA--ATAATTATATTT
85668 AATTATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.30
15 8 0.30
16 7 0.26
17 4 0.15
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (15 bp):
TAATAATTATATTTC
Found at i:85672 original size:15 final size:15
Alignment explanation
Indices: 85640--85691 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
85630 TTTATTTCTA
*
85640 ATAATTATATTTCTATT
1 ATAA-TATATTT-AATT
85657 ATAATATATTTAATT
1 ATAATATATTTAATT
*
85672 ATAATAT-TATAATTT
1 ATAATATATTTAA-TT
85687 ATAAT
1 ATAAT
85692 CATGAAACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 4 0.12
15 17 0.53
16 7 0.22
17 4 0.12
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
ATAATATATTTAATT
Found at i:88712 original size:322 final size:321
Alignment explanation
Indices: 88325--91215 Score: 3748
Period size: 322 Copynumber: 9.0 Consensus size: 321
88315 CGTCAATTTA
* *
88325 TTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG-AAAAAACTATTCGG
1 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAAAT-TTCGG
* * *
88389 GTAAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAATGCATTTCGGAGC
65 GTCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGC
*
88454 CCCAGCTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCAAACCA
130 CCC-GCTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCA
* * *
88519 AAACTCAGCAATATTGGATATAAGGATTTCTTTTTGCGAGCATCTCAATCTTGTTTCGATTTAAT
194 AAAGTCAGCAATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAAT
* *
88584 TAGAAATTAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCGT
259 TAGAAATTAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTT
** * * *
88647 TTTGGAATTGAATTATATATTTTTTCTGTGTATTATGGAAAAAAATTGAGAAAAAAAATTTCGGG
1 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAAATTTCGGG
* * * * * * *
88712 TTAGTTTTTAGCTGAAATCGTTTACTAACCATAACGGTTTTTGGCT-AAAACGCGTTCCGGAGCA
66 TCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCC
* * *
88776 CCGACTCAATTTCGCATGATTTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAA
131 CCG-CTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAA
* * * *
88841 ATGTCAGCCATATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
195 AAGTCAGCAATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATT
* * * * *
88906 AGAAGTTAATTCAGAAAAAAATGGAAAAAACGATATTAGAAGCGTTAAAACCCCGTCAATTTT
260 AGAAATTAATTCGGAAAAAAATGG-AAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTT
* * * * * *
88969 TTTGGTGTTGAATTATATATTTTTCCTGAATATTGTGCCAAAAAATTGAGAAAAAAACTTTTCAG
1 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAA-ATTTCGG
*
89034 GTCAGTTTTTA-CTGAAATCGTTTACTAACCATCACGGTTTTTGGCTAAAAATAG-ATTTCGGAG
65 GTCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAT-GCATTTCGGAG
* * *
89097 TCCCGACTCAATTTTGCATGATTTATGCCACAAAGACTCCTTGAAATATCTATATTCATCGAACC
129 CCCCG-CTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACC
89162 AAAAGTCAGCAATATTGGATATAAGGATTT-TTTTTTCGAGCATCTCAATCTTGTTTCGATTTAA
193 AAAAGTCAGCAATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAA
* * ** * *
89226 TTAGAAATTAATTCGGAAAAAAATAGAAAAACGAAATTAGAAGTATAAAAAGACCGTTAATCTT
258 TTAGAAATTAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTT
* * ** * *
89290 TTTGGCATTGGATTATATAGATTTTCTGTGTATTGTGGCAAAAAATTGAG-AAAAACATTT-GGG
1 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAAATTTCGGG
* * * * *
89353 TTAGTTTTTAGCTGAAATCGTG---T-ACCATCACAGTTTTTGGCTAAAAACGCGTTCCGGAGCC
66 TCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCC
* * * *
89414 CCAACTCAATTTTGCATGATTTTTGACGCAAAGACTCCTTGAAATATCTATCTTCATCGAACCAA
131 CC-GCTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAA
* * * * * * * *
89479 ATGTCAGCCACATTAGATATAAGGATTTGTTTTTACAAGCATATGAATCTTGTTTCGATTTAATT
195 AAGTCAGCAATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATT
* * * *
89544 AGAAATTAATTCAGAAAAAAATGGAAAAAACGATATTAGAAGCGTTAAAACCCCGTCAATTTT
260 AGAAATTAATTCGGAAAAAAATGG-AAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTT
* * * * * ***
89607 TTTGGTGTTGGATTATATATTTTTCCTGAATATTGTGCCAAAAAATTGAGAAAAAACCCTTCGGG
1 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAAATTTCGGG
* * *
89672 CCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT-TCTAAAAATGCATTTCGGAGCC
66 TCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCC
* * *
89736 CCGGCTTAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCGTTGAACCAA
131 CC-GCTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAA
* * * *
89801 AACTCAGGAATATTGGATATAAGGATTTTTTTTTTACGATCATCTCAATCTTGTTTCGATTTAAT
195 AAGTCAGCAATATTGGATATAAGGATTTGTTTTTT-CGAGCATCTCAATCTTGTTTCGATTTAAT
* * * * * *
89866 TAGAAATTAATTCGGGAAAAAAATAGAAAGACGATATTAGAAGCGTAAAAAACCTGTTAATTTT
259 TAGAAATTAATTC-GGAAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTT
* * *
89930 TTTGGCATTGAATTATATATTTTTTCTGTGTATTGCGGCAAAAAATTGAGAAAAAAAA-TTCGGG
1 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAAATTTCGGG
* * * * *
89994 TTAGTTTTTAGCTGAAATCGTGTACTAATCATC-CGGGTTTTTTGCTAAAAATGCGTTCCGGAGC
66 TCAGTTTTTAGCTGAAATCGTGTACTAACCATCAC-GGTTTTTGGCTAAAAATGCATTTCGGAGC
* * * * *
90058 CCCGACTCGATTTTACATGATTTTTGACGCAAAGACTCCTTGAAATATCTTTATTCATCGAACCA
130 CCCG-CTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCA
* * * *
90123 AATGTCAGCCACATTGGATATAAGGATTTGTTTTTTCGAACATCTCAATCTTGTTTCGATTTAAT
194 AAAGTCAGCAATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAAT
* * * * * *
90188 TAGAAATTAATTCGG-GAAAAATGCAAAAACCATATTAGAAGTGTGAAAAGCCCATCAATCTT
259 TAGAAATTAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTT
* * * * *
90250 TTTGGCGTTTAATTATATATTATTTCTGTGTATTGTGGCAAAAAATTAATAAAAATAAATTTCGG
1 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAA-AAATTTCGG
* * * ** *
90315 GTTAGTTTTTAGCTGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAACGTGTTCCGGAGC
65 GTCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGC
* * * ** * *
90380 TCCGACTCAATTTTACATGATTTTTGACGTAAAGATTCCTTGAAATATCTGTATTCATCGAACCA
130 CCCG-CTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCA
* * *
90445 AATGTCAGCCACATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAAT
194 AAAGTCAGCAATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAAT
* * *
90510 TAGAAATTAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGTCAATCTT
259 TAGAAATTAATTCGG-AAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTT
* * ** *
90574 TTTGGCGTT-AATTATATATTATTTCTGAGTATTGTGCCAAAAAATTGAGAAAAAATTTTTCAGG
1 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAAATTTCGGG
* *
90638 TCAGTTTTTAAGCCGAAATCGTGTACTTAACTATCACGGTTTTTGGCTAAAAATGCATTTCGGAG
66 TCAGTTTTT-AGCTGAAATCGTGTAC-TAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAG
* *
90703 CCCCGGCCCAATTTTGCATGATTTTTGGCACAAAGACTCCTTAAAATATCTATATTCATCGAACC
129 CCCC-GCTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACC
* * *
90768 AAAACTCAGCAATATTGGATATAAAGATTTCTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAA
193 AAAAGTCAGCAATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAA
* * *
90833 TTAGAAATTAATTCGGAAAAAAAATGGATAAACGATTTTAGAAGTGTGAAAAA-CCCGTCAATCT
258 TTAGAAATTAATTCGG-AAAAAAATGGAAAAACGATATTAGAAGCGT-AAAAAGCCCGTCAATCT
90897 T
321 T
* * * * * **
90898 TTTGGCGTTTAATTATATATTATTTATGAGTATTGTGCCAAAAAATCGAGAAAAAACTTTTCGGG
1 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAAATTTCGGG
* *
90963 TCAGTTTTTATCCGAAATCGTG---------TCACGGTTTTTGGCTAAAAATGCATTTCGGAGCC
66 TCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCC
* * * *
91019 CCGGCTCAATTCTGTATGATTTTTGGAACAAAGACTCCTTGAAATATCTATATTTATCGAACCAA
131 CC-GCTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAA
* *
91084 AACTCAGCAATATTGGATATAAGGATTTCTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATT
195 AAGTCAGCAATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATT
* * *
91149 AGAAATTAATTTGG-ACAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTAAATCTT
260 AGAAATTAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTT
91210 TTTGGC
1 TTTGGC
91216 TAAAAACGTG
Statistics
Matches: 2265, Mismatches: 271, Indels: 76
0.87 0.10 0.03
Matches are distributed among these distances:
311 5 0.00
312 42 0.02
314 171 0.08
315 114 0.05
316 55 0.02
317 72 0.03
318 19 0.01
319 35 0.02
320 90 0.04
321 232 0.10
322 668 0.29
323 413 0.18
324 284 0.13
325 65 0.03
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (321 bp):
TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAAATTTCGGG
TCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCC
CCGCTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAA
AGTCAGCAATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATTA
GAAATTAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTT
Found at i:90011 original size:960 final size:956
Alignment explanation
Indices: 87180--91215 Score: 4475
Period size: 960 Copynumber: 4.1 Consensus size: 956
87170 GAAGCGTAAT
* * * *
87180 GCAATATTGGATATAAGAATTT-ATTTTTCGAGCATGTCAATCTTGTTTTGATTTAATTAGAAAT
1 GCAATATTGGATATAAGGATTTCTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATTAGAAAT
* * * ** * * *
87244 TAATAC--AAAAAATTG-GAAAACGATATTAGAAGTATGAAAAGTCTGTCAATCTTTTTGGCTAT
66 TAATTCGGAAAAAATAGAAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTTTTTGGC---
* * ****
87306 TGAATTATATATATATATATTTTTTTTTTCTATGTATTGTGGCAAAAAATTGAGAAATTTTTTTT
128 -G--TT-GA-AT-TATATA-----TTTTTCTGTGTATTGTGGCAAAAAATTGAGAAA---AACAT
* * * * * * *
87371 TCTCTGGTCAGTTATTAGCCGAAATCGTTTACTAACAATCACGGTTTTTGGCT-AGAA-GCGTTC
179 T-T-GGGTTAGTTTTTAGCTGAAATCG-TGA-TAACCATCAC-GTTTTTGGCTAAAAACGCGTTC
* ** * * * *
87434 TGGAGCCCCGGCTCAATTTTGCATGATTTTTGGCGCAAACACTCCTTTAAATATTTATATTCATC
239 CGGAGCCCCAACTCAATTTTGCATGATTTTTGACGCAAAGACTCCTTGAAATATCTATATTCATC
* * *
87499 GAACCAAATGTTAGCCACATTGCATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
304 GAACCAAATGTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGA
* * * * * *
87564 TTTATTTAGAAATTAATTC-GGAAAAAATGTAAAAACGATATTAGAAGCGTGAAAAGTCCGTTAA
369 TTTAATTAGAAATTAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAA
* * * * ** **
87628 TATTTTTCGTGTTAAATTATATATTTTCTCTGAGTATTGTG-GTAAAAATTGAGAAAAAACTTTT
434 TCTTTTTGGAGTTGAATTATATATTTT-TCTGAGTATTGTGCCAAAAAATTGAGAAAAAAAATTT
* *
87692 CGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGTTAAAAA-GCGTTTCGG
498 CGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGG
** * * *
87756 AGATCCGACTCAATTTTGCATGATTTTTGACGCAAAGACTCCTTGAAATATC--TATTCATCGAA
563 AGCCCCGGCTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAA
* *
87819 CCAAATCTCAACAATATTGGATATAAGGA-TTTTTTTTT-CGAGCA--TCAATCTTGTTTCGATT
628 CCAAAACTCAGCAATATTGGATATAAGGATTTTTTTTTTACGAGCATCTCAATCTTGTTTCGATT
* * * * * *
87880 TAATTAAAAATTAATTAGGAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAAT
693 TAATTAGAAATTAATTCGGGAAAAAAATGG-AAAACGATATTAGAAGCGTAAAAAACCCGTCAAT
* * * * * *
87945 GTTTTTGGCGTTGAATCATATATATTTTCTGTGTATTGTGGC-GAAAATTGAGAAAAAAACTTTT
757 TTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGCCAAAAAATTGAGAAAAAAA--TTT
** * * *
88009 CGCATCAGTTTTTAGCCGAAATCGTGTAGTAACCATCACTGTATATTTTTTCTGAGTATTGTGGC
820 CGGGTCAGTTTTTA-CTGAAATCGT-TACTAA-CAT--C-----A------C-G-GT-TTTTGGC
88074 AAAAAATTGAGAAAAACTACATCACGCAATTT-GGCTAAAAACATGTTCCAGAGGCCAGA-TCAA
866 -------T-----AAA--A-AT---GC-ATTTCGG--------A-G--CC-----CC-GACTCAA
* * *
88137 TTTTGCATGATTTTTGGCGCAAAGACTCATTAAAATATCTATATTCATCGAACCAAATA-TCA
895 TTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAA-AGTCA
* * *
88199 GTC-ATATTGAATATAAGGATTTGTTTTTTTCAAGCATCTCAATCTTGTTTCGATATTTTAATTA
1 G-CAATATTGGATATAAGGATTT-CTTTTTTCGAGCATCTCAATCTTGTTTCG--A-TTTAATTA
* * *
88263 GAAATTAATTCGGAAAAAAATAGAAAAAATGATATTAGAAGCGTGAAAACCCCGTCAAT-TTATT
61 GAAATTAATTCGG-AAAAAATAGAAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTT-TT
* * * *
88327 TGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTATTCGGGTA
124 TGGCGTTGAATTATATA-TTTTTCTGTGTATTGTGGCAAAAAATTGAG-AAAAAC-ATTTGGGTT
* * * *
88392 AGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAATGCATTTCGGAGCCCC
186 AGTTTTTAGCTGAAATCGTG-A-TAACCATCACG-TTTTTGGCTAAAAACGCGTTCCGGAGCCCC
* * * * *
88457 AGCTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCAAACCAAAA
248 AACTCAATTTTGCATGATTTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAAT
* * * * *
88522 CTCAGCAATATTGGATATAAGGATTTCTTTTTGCGAGCATCTCAATCTTGTTTCGATTTAATTAG
313 GTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAG
*
88587 AAATTAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCGTTTTGG
378 AAATTAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTTTTTGG
* * * ** *
88652 AATTGAATTATATATTTTTTCTGTGTATTATGGAAAAAAATTGAGAAAAAAAATTTCGGGTTAGT
443 AGTTGAATTATATA-TTTTTCTGAGTATTGTGCCAAAAAATTGAGAAAAAAAATTTCGGGTCAGT
* * * * * * * *
88717 TTTTAGCTGAAATCGTTTACTAACCATAACGGTTTTTGGCT-AAAACGCGTTCCGGAGCACCGAC
507 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCCCCGGC
* * * **
88781 TCAATTTCGCATGATTTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTC
572 TCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAAACTC
* * *
88846 AGCCATATTGGATATAAGGA-TTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
637 AGCAATATTGGATATAAGGATTTTTTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAA
* * * *
88910 GTTAATTC-AGAAAAAAATGGAAAAAACGATATTAGAAGCGTTAAAACCCCGTCAATTTTTTTGG
702 ATTAATTCGGGAAAAAAATGG--AAAACGATATTAGAAGCGTAAAAAACCCGTCAATTTTTTTGG
* * * *
88974 TGTTGAATTATATATTTTTCCTGAATATTGTGCCAAAAAATTGAGAAAAAAACTTTTCAGGTCAG
765 CGTTGAATTATATATTTTTTCTGAGTATTGTGCCAAAAAATTGAGAAAAAAA--TTTCGGGTCAG
*
89039 TTTTTACTGAAATCGTTTACTAACCATCACGGTTTTTGGCTAAAAATAG-ATTTCGGAGTCCCGA
828 TTTTTACTGAAATCG-TTACTAA-CATCACGGTTTTTGGCTAAAAAT-GCATTTCGGAGCCCCGA
* *
89103 CTCAATTTTGCATGATTTATGCCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAAAGT
890 CTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAAAGT
89168 CA
955 CA
89170 GCAATATTGGATATAAGGATTT-TTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATTAGAAAT
1 GCAATATTGGATATAAGGATTTCTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATTAGAAAT
* ** * * *
89234 TAATTCGGAAAAAAATAG-AAAAACGAAATTAGAAGTATAAAAAGACCGTTAATCTTTTTGGCAT
66 TAATTCGG-AAAAAATAGAAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTTTTTGGCGT
* *
89298 TGGATTATATAGATTTTCTGTGTATTGTGGCAAAAAATTGAGAAAAACATTTGGGTTAGTTTTTA
130 TGAATTATATA-TTTTTCTGTGTATTGTGGCAAAAAATTGAGAAAAACATTTGGGTTAGTTTTTA
89363 GCTGAAATCGTG-T-ACCATCACAGTTTTTGGCTAAAAACGCGTTCCGGAGCCCCAACTCAATTT
194 GCTGAAATCGTGATAACCATCAC-GTTTTTGGCTAAAAACGCGTTCCGGAGCCCCAACTCAATTT
*
89426 TGCATGATTTTTGACGCAAAGACTCCTTGAAATATCTATCTTCATCGAACCAAATGTCAGCCACA
258 TGCATGATTTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAGCCACA
* * * *
89491 TTAGATATAAGGATTTGTTTTTACAAGCATATGAATCTTGTTTCGATTTAATTAGAAATTAATTC
323 TTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTC
* * * * *
89556 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTTAAAACCCCGTCAATTTTTTTGGTGTTGGATT
388 AGAAAAAAATGG-AAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTTTTTGGAGTTGAATT
* *** *
89621 ATATATTTTTCCTGAATATTGTGCCAAAAAATTGAGAAAAAACCCTTCGGGCCAGTTTTTAGCCG
452 ATATATTTTT-CTGAGTATTGTGCCAAAAAATTGAGAAAAAAAATTTCGGGTCAGTTTTTAGCCG
* *
89686 AAATCGTGTACTAACCATCACGGTTTTT-TCTAAAAATGCATTTCGGAGCCCCGGCTTAATTTTG
516 AAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCCCCGGCTCAATTTTG
* * *
89750 CATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCGTTGAACCAAAACTCAGGAATATT
581 CATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATT
*
89815 GGATATAAGGATTTTTTTTTTACGATCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCG
646 GGATATAAGGATTTTTTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCG
* * * *
89880 GGAAAAAAATAGAAAGACGATATTAGAAGCGTAAAAAACCTGTTAATTTTTTTGGCATTGAATTA
711 GGAAAAAAATGGAAA-ACGATATTAGAAGCGTAAAAAACCCGTCAATTTTTTTGGCGTTGAATTA
* * * * *
89945 TATATTTTTTCTGTGTATTGCGGCAAAAAATTGAGAAAAAAAATTCGGGTTAGTTTTTAGCTGAA
775 TATATTTTTTCTGAGTATTGTGCCAAAAAATTGAGAAAAAAATTTCGGGTCAGTTTTTA-CTGAA
* * * * *
90010 ATCGTGTACTAATCATC-CGGGTTTTTTGCTAAAAATGCGTTCCGGAGCCCCGACTCGATTTTAC
839 ATCGT-TACTAA-CATCAC-GGTTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATTTTGC
* * * *
90074 ATGATTTTTGACGCAAAGACTCCTTGAAATATCTTTATTCATCGAACCAAATGTCA
901 ATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAAAGTCA
* * * *
90130 GCCACATTGGATATAAGGATTTGTTTTTTCGAACATCTCAATCTTGTTTCGATTTAATTAGAAAT
1 GCAATATTGGATATAAGGATTTCTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATTAGAAAT
* * * * * *
90195 TAATTCGGGAAAAAT-GCAAAAACCATATTAGAAGTGTGAAAAGCCCATCAATCTTTTTGGCGTT
66 TAATTCGGAAAAAATAGAAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTTTTTGGCGTT
* * * *
90259 TAATTATATATTATTTCTGTGTATTGTGGCAAAAAATTAATAAAAATAAATTTCGGGTTAGTTTT
131 GAATTATATATT-TTTCTGTGTATTGTGGCAAAAAATTGA-GAAAA-ACATTT-GGGTTAGTTTT
* * *
90324 TAGCTGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAACGTGTTCCGGAGCTCCGACTCA
192 TAGCTGAAATCGTG-A-TAACCATCAC-GTTTTTGGCTAAAAACGCGTTCCGGAGCCCCAACTCA
* * * *
90389 ATTTTACATGATTTTTGACGTAAAGATTCCTTGAAATATCTGTATTCATCGAACCAAATGTCAGC
254 ATTTTGCATGATTTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAGC
*
90454 CACATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTA
319 CACATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTA
* * * * *
90519 ATTCGGAAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGTCAATCTTTTTGGCGTT-
384 ATTCAG-AAAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTTTTTGGAGTTG
** *
90583 AATTATATATTATTTCTGAGTATTGTGCCAAAAAATTGAGAAAAAATTTTTCAGGTCAGTTTTTA
448 AATTATATATT-TTTCTGAGTATTGTGCCAAAAAATTGAGAAAAAAAATTTCGGGTCAGTTTTT-
* *
90648 AGCCGAAATCGTGTACTTAACTATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCCCCGGCCCA
511 AGCCGAAATCGTGTAC-TAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCCCCGGCTCA
*
90713 ATTTTGCATGATTTTTGGCACAAAGACTCCTTAAAATATCTATATTCATCGAACCAAAACTCAGC
575 ATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAAACTCAGC
* *
90778 AATATTGGATATAAAGATTTCTTTTTT-CGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATT
640 AATATTGGATATAAGGATTTTTTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATT
* * * * *
90842 AATTCGGAAAAAAAATGGATAAACGATTTTAGAAGTGTGAAAAACCCGTCAATCTTTTTGGCGTT
705 AATTCGGGAAAAAAATGGA-AAACGATATTAGAAGCGTAAAAAACCCGTCAATTTTTTTGGCGTT
* * * * *
90907 TAATTATATATTATTTATGAGTATTGTGCCAAAAAATCGAGAAAAAACTTTTCGGGTCAGTTTTT
769 GAATTATATATTTTTTCTGAGTATTGTGCCAAAAAATTGAGAAAAAA-ATTTCGGGTCAGTTTTT
* * *
90972 ATCCGAAATCG----T---GTCACGGTTTTTGGCTAAAAATGCATTTCGGAGCCCCGGCTCAATT
833 A-CTGAAATCGTTACTAACATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATT
* * * * *
91030 CTGTATGATTTTTGGAACAAAGACTCCTTGAAATATCTATATTTATCGAACCAAAACTCA
897 TTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAAAGTCA
91090 GCAATATTGGATATAAGGATTTCTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATTAGAAAT
1 GCAATATTGGATATAAGGATTTCTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATTAGAAAT
* * * *
91155 TAATTTGGACAAAAT-GGAAAAACGATATTAGAAGCGTAAAAAGCCCGTAAATCTTTTTGGC
66 TAATTCGGAAAAAATAGAAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTTTTTGGC
91216 TAAAAACGTG
Statistics
Matches: 2632, Mismatches: 322, Indels: 185
0.84 0.10 0.06
Matches are distributed among these distances:
959 198 0.08
960 624 0.24
961 182 0.07
962 15 0.01
963 51 0.02
964 7 0.00
965 71 0.03
966 87 0.03
967 228 0.09
968 155 0.06
969 165 0.06
970 4 0.00
971 80 0.03
976 1 0.00
978 1 0.00
979 1 0.00
986 4 0.00
987 2 0.00
988 1 0.00
990 2 0.00
991 1 0.00
993 3 0.00
998 1 0.00
1005 6 0.00
1006 2 0.00
1007 1 0.00
1008 1 0.00
1011 2 0.00
1012 40 0.02
1013 3 0.00
1014 139 0.05
1015 101 0.04
1016 128 0.05
1018 45 0.02
1019 31 0.01
1020 13 0.00
1021 138 0.05
1022 35 0.01
1023 1 0.00
1024 19 0.01
1027 10 0.00
1028 33 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (956 bp):
GCAATATTGGATATAAGGATTTCTTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATTAGAAAT
TAATTCGGAAAAAATAGAAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTTTTTGGCGTT
GAATTATATATTTTTCTGTGTATTGTGGCAAAAAATTGAGAAAAACATTTGGGTTAGTTTTTAGC
TGAAATCGTGATAACCATCACGTTTTTGGCTAAAAACGCGTTCCGGAGCCCCAACTCAATTTTGC
ATGATTTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAGCCACATTG
GATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCAGA
AAAAAATGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTCAATCTTTTTGGAGTTGAATTATAT
ATTTTTCTGAGTATTGTGCCAAAAAATTGAGAAAAAAAATTTCGGGTCAGTTTTTAGCCGAAATC
GTGTACTAACCATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCCCCGGCTCAATTTTGCATGA
TTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATA
TAAGGATTTTTTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGGAAA
AAAATGGAAAACGATATTAGAAGCGTAAAAAACCCGTCAATTTTTTTGGCGTTGAATTATATATT
TTTTCTGAGTATTGTGCCAAAAAATTGAGAAAAAAATTTCGGGTCAGTTTTTACTGAAATCGTTA
CTAACATCACGGTTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATTTTGCATGATTTTTG
GCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAAAGTCA
Found at i:91707 original size:531 final size:524
Alignment explanation
Indices: 90677--91699 Score: 1255
Period size: 531 Copynumber: 1.9 Consensus size: 524
90667 ACTATCACGG
* * * * * *
90677 TTTTTGGCTAAAAATGCATTTCGGAGCCCCGGCCCAATTTTGCATGATTTTTGGCACAAAGACTC
1 TTTTTGGCTAAAAACGCATTCCGGAGCCCCGACCCAATTTTGCAAGACTTTTGACACAAAGACTC
* *
90742 CTTAAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAAGATTTCTTTTTTCG
66 CTTAAAATATCTATATTCATCGAACCAAAACTCAGCAACATTGAATATAAAGATTTCTTTTTTCG
* *
90807 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATGGATAAACGATTTT
131 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAAATGGAAAAACGATATT
* * * * *
90872 AGAAGTGTGAAAAACCCGTCAATCTTTTTGGCGTTTAATTATATATTATTTATGAGTATTGTGCC
195 AGAAGCGTGAAAAACCCGTAAATCTTTTTGGCATTGAATTATATATTATTTATGAGTACTGTGCC
** * *
90937 AAAAAATCGAGAAAAAACTTTTCGGGTCAGTTTTTATCCGAAATCGTGTCACGGTTTTTGGCTAA
260 AAAAAATCGAGAAAAAAAATTTCGGCTCACTTTTTATCCGAAATCGTGTCACGGTTTTTGGCTAA
* ** * * * *
91002 AAATGCATTTCGGAGCCCCGGCTCAATTCTGTATGATTTTTGGAACAAAGACTCCTTGAAATATC
325 AAACGCATTTCGGAGCCCCAACTCAATTCTGCATGACTTTTGGAACAAAAACTCCTTGAAAAATC
* * * * *
91067 TATATTTATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCGAGCATCTCAAT
390 TATATTAATCGAACCAAAACTCAGCAACAATGAATATAAGGATTTCTTTTTTCGAGAATCTCAAT
*
91132 CTTGTTTCGATTTAATTAGAAATTAATTTGGACAAAATGGAAAAACGATATTAGAAGCGTAAAAA
455 CTTGATTCGATTTAATTAGAAATTAATTT-G-C---A-GGAAAAACGATATTAGAAGCGTAAAAA
91197 GCCCGTAAATC
514 GCCCGTAAATC
** * * *
91208 TTTTTGGCTAAAAACGTGTTCCGGAGTCCCGACTCAATTTTGCAAGACTTTTGACGCAAAGACTC
1 TTTTTGGCTAAAAACGCATTCCGGAGCCCCGACCCAATTTTGCAAGACTTTTGACACAAAGACTC
** * * *
91273 CTTAAAATATCTATATTCATCGAACCAAATGTCAGCCACATTGAATATAAGGATTTGTTTTTTCG
66 CTTAAAATATCTATATTCATCGAACCAAAACTCAGCAACATTGAATATAAAGATTTCTTTTTTCG
91338 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAATGGAAAAAACGATATT
131 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATGG-AAAAACGATATT
* * *
91402 AGAAGCGT-AAAAAGCCCGTAAATCTTTTTGGCATTGAATTCTATATT-TTGTCTGTGTACTGTG
195 AGAAGCGTGAAAAA-CCCGTAAATCTTTTTGGCATTGAATTATATATTATT-TATGAGTACTGTG
* * * * *
91465 GCAAAAAATTGAGAAAAAAAATTTCGGCTTACTTTTTA-GCTATAATCGTGTAATAACCATCACG
258 CCAAAAAATCGAGAAAAAAAATTTCGGCTCACTTTTTATCCGA-AATCGTG---------TCACG
** * *
91529 GTTTTTGGCTAAAAACGTTTTTCGGAGCCCCAACTCAATTTTGCATGACTTTT-GACGCAAAAAC
313 GTTTTTGGCTAAAAACGCATTTCGGAGCCCCAACTCAATTCTGCATGACTTTTGGA-ACAAAAAC
* * ** * * *
91593 TTCTTGAAAAATCTATATTAATCGATCCAAATGTTATGCCACAATGAATATAAGGATTTGTTTTT
377 TCCTTGAAAAATCTATATTAATCGAACCAAAACTCA-GCAACAATGAATATAAGGATTTCTTTTT
*
91658 TCGAGAATCTCAATCTTGATTCGATTTGATTAGAAATTAATT
441 TCGAGAATCTCAATCTTGATTCGATTTAATTAGAAATTAATT
91700 CGGAAAAAAA
Statistics
Matches: 415, Mismatches: 62, Indels: 21
0.83 0.12 0.04
Matches are distributed among these distances:
529 18 0.04
530 94 0.23
531 154 0.37
538 2 0.00
539 85 0.20
540 62 0.15
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Consensus pattern (524 bp):
TTTTTGGCTAAAAACGCATTCCGGAGCCCCGACCCAATTTTGCAAGACTTTTGACACAAAGACTC
CTTAAAATATCTATATTCATCGAACCAAAACTCAGCAACATTGAATATAAAGATTTCTTTTTTCG
AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATGGAAAAACGATATTA
GAAGCGTGAAAAACCCGTAAATCTTTTTGGCATTGAATTATATATTATTTATGAGTACTGTGCCA
AAAAATCGAGAAAAAAAATTTCGGCTCACTTTTTATCCGAAATCGTGTCACGGTTTTTGGCTAAA
AACGCATTTCGGAGCCCCAACTCAATTCTGCATGACTTTTGGAACAAAAACTCCTTGAAAAATCT
ATATTAATCGAACCAAAACTCAGCAACAATGAATATAAGGATTTCTTTTTTCGAGAATCTCAATC
TTGATTCGATTTAATTAGAAATTAATTTGCAGGAAAAACGATATTAGAAGCGTAAAAAGCCCGTA
AATC
Found at i:92459 original size:651 final size:646
Alignment explanation
Indices: 91208--93864 Score: 3425
Period size: 651 Copynumber: 4.1 Consensus size: 646
91198 CCCGTAAATC
* ** * * * * * *
91208 TTTTTGGCTAAAAACGTGTTCCGGAGTCCCGACTCAATTTTGCAAGACTTTTGACGCAAAGACTC
1 TTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATTTTGCATGATTTTTGGCACAAAGACTC
* ** * * * *
91273 CTTAAAATATCTATATTCATCGAACCAAATGTCAGCCACATTGAATATAAGGATTTGTTTTTTCG
66 CTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCG
* *
91338 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAAACGATATTA
131 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGAAAAAAAAGG-AAAAACGATATTA
* * * * *
91403 GAAGCGTAAAAAGCCCGTAAATCTTTTTGGCATTGAATTCTATATT-TTGTCTGTGTACTGTGGC
195 GAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTATT-TCTGAGTATTGTGGC
** * * *
91467 AAAAAATTGAGAAAAAAAATTTCGGCTTACTTTTTAG-CTATAATCGTGTAATAACCATCACGGT
259 AAAAAATTGAGAAAAAACTTTTCGGGTTAGTTTTTAGCCGA-AATCGTGTAATAACCATCACGGT
**** ** * * *
91531 TTTTGGCTAAAAACGTTTTTCGGAGCCCCAACTCAATTTTGCATGACTTTTGACGCAAAAACTTC
323 TTTTGGCTAAAAATACATTTCGGAGCCCTGACTCAATTTTGCATGA-TTTTGACACAAATACTCC
* * * ** * * *
91596 TTGAAAAATCTATATTAATCGATCCAAATGTTATGCCACAA-TGAATATAAGGATTTGTTTTTTC
387 TTGAAATATCTATATTCATCGAACCAAAACTCA-GCCA-AATTGGATATAAGGATTTCTTTTTTC
* * * *
91660 GAGAATCTCAATCTTGATTCGATTTGATTAGAAATTAATTCGGAAAAAAAAATGGAAAAACGATA
450 GAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAAATGGAAAAAAGATA
* * * *
91725 TTAGAAGTGTGAAAAGTCTGTCAATATTTTTGGCGTTTAATTATATATTATTTCTGAGTACTGTG
515 TTAGAAGTGTGAAAAGCCCGTCAATATTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTG
* * *
91790 CCAAAAAATTGAAAAAAAAAAACTTTTTAGGTCAGTTTTTAGGCGAAATCGTGTACTAACCATCA
580 CCAAAAAATTG-AGAAAAAAAACTTTTCAGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCA
91855 CGG
644 CGG
*
91858 TTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATTTTGCATGATTTTTTGGCAAAAAGACT
1 TTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATTTTGCATGA-TTTTTGGCACAAAGACT
91923 CCTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTC
65 CCTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTC
* * *
91988 GAGCATCTCAAACTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAAAAAGGGAAAACGATATT
130 GAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAA-TTCGAAAAAAAAGGAAAAACGATATT
* * * * * *
92053 AGAAGTGTGAAAAGTCCGTCAATCTTTTTGGCGTTTAATTATATATTATTTATGAGTATTGTGCC
194 AGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTATTTCTGAGTATTGTGGC
* * * * *
92118 AAAAAATTGAGAAATAACTTTTCGGGTCAGTTTTTATCCGAAATCGTGTACTAACCATCACAGTT
259 AAAAAATTGAGAAAAAACTTTTCGGGTTAGTTTTTAGCCGAAATCGTGTAATAACCATCACGGTT
* * *
92183 TTTGGCTAAAAATACATTTCAGAGCCCTGGCTCAATTTTGCATGATATTTGGCACAAATACTCCT
324 TTTGGCTAAAAATACATTTCGGAGCCCTGACTCAATTTTGCATGAT-TTTGACACAAATACTCCT
*
92248 TGAAATATCTATATTCATCAAACCAAAACTCAG-CAAATTCTGGATATAAGGATTTCTTTTTTCG
388 TGAAATATCTATATTCATCGAACCAAAACTCAGCCAAA-T-TGGATATAAGGATTTCTTTTTTCG
92312 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAAAATGGAAAAAAGATAT
451 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAAATGGAAAAAAGATAT
* * * * * *
92376 TAGAAGTGTTAAAAGCACGTCAATCTTTTTTGCGTATAATTATATATTATTTCTGAGTATTGTGC
516 TAGAAGTGTGAAAAGCCCGTCAATATTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTGC
* * * *
92441 CAAAATATCGAGAAAAAAAACTTTTCGGGTCAGTTTTTATCCGAAATCGTG---------TCACG
581 CAAAAAATTGAGAAAAAAAACTTTTCAGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACG
92497 G
646 G
* * **
92498 TTTTTGGCTAAAAATGCATTTCGGAGCCCCGGCTCAATTTTGCATGATATTTGGCACAATTACTC
1 TTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATTTTGCATGATTTTTGGCACAAAGACTC
* *
92563 CTTGAAATATCTATATTCATCTAACCAAAACTCAGCAATATTGGATTTAAGGATTTCTTTTTTCG
66 CTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCG
* * *
92628 AGCATCTCAATTTTGTTTCGATTAAATTAAAAATTAATTCGGAAAAAAAAATGGAAAAACGATAT
131 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTC-G-AAAAAAAA-GGAAAAACGATAT
* * * *
92693 TAGAAGTGTGAAAAGCCCGTCAATCTTTTTGGCGTTTAATTATATGTTATTTCTGAGTATTGTGG
193 TAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTATTTCTGAGTATTGTGG
* *
92758 CAAAAAATTGAGAAAAAACTTTTCGGGTTAATTTTTAGCTGAAATCGTGTAATAACCATCACGGT
258 CAAAAAATTGAGAAAAAACTTTTCGGGTTAGTTTTTAGCCGAAATCGTGTAATAACCATCACGGT
* * *
92823 TTTTGACTAAAAATGCATTTCGGAGCCC-GACTCAATTTTGCATGATATTTGGCACAAATACTCC
323 TTTTGGCTAAAAATACATTTCGGAGCCCTGACTCAATTTTGCATGAT-TTTGACACAAATACTCC
* **
92887 TTGAACTATCTATATTCATCGAATAAAAACTCAG-CAATATTGGATATAAGGATTTCTTTTTTCG
387 TTGAAATATCTATATTCATCGAACCAAAACTCAGCCAA-ATTGGATATAAGGATTTCTTTTTTCG
* *
92951 AGCATCTCAATTTTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAAAATGGAAAAACGATAT
451 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAAATGGAAAAAAGATAT
* * *
93015 TAGAAGT-TCGAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTATATATGAGTATTGTG
516 TAGAAGTGT-GAAAAGCCCGTCAATATTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTG
* *
93079 CCAAAAAATT--GATAAAAAACTTTTCAGGTAAGTTTTTAGCCGAAATCGTGTACTAACCATCAC
580 CCAAAAAATTGAGAAAAAAAACTTTTCAGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCAC
93142 GG
645 GG
93144 TTTTTGGCTAAAAATGCATTTCGGAG-CCCGACTCAATTTTGCATGATTTTTGGCACAAAGACTC
1 TTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATTTTGCATGATTTTTGGCACAAAGACTC
93208 CTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCG
66 CTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCG
* * *
93273 AGCATCTCAATCTTGTTTCGATTTAATTAGAAGTTAATTCG-GAAAAATGGAAAAACGATATTAG
131 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGAAAAAAAAGGAAAAACGATATTAG
* * *
93337 AAGCGTGAAAAGCCCGTCAATATTTTTGGCATTGAATTATATATTTTTTCTGTGTATTGTGGCAA
196 AAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTATTTCTGAGTATTGTGGCAA
* * *
93402 AAAATTGAGAAAAAACTTATCGGGTTAGTTTTTAGCTGAAATTGTGTACTAAATAACCATCACGG
261 AAAATTGAGAAAAAACTTTTCGGGTTAGTTTTTAGCCGAAATCGTG---T-AATAACCATCACGG
* * * *
93467 TTTTTGGCT-AAAA-ACGTTTCCGGAG-CCTCGGCTCAATTTTGCATGATTTTAGACGCAAAGAC
322 TTTTTGGCTAAAAATACATTT-CGGAGCCCT-GACTCAATTTTGCATGATTTT-GACACAAATAC
* ** * * *
93529 TCCTTGAAATATCTATATTCATCGAATCAAATGTCAGCCACATTGGATATAAGGATTTGTTTTTA
384 TCCTTGAAATATCTATATTCATCGAACCAAAACTCAGCCAAATTGGATATAAGGATTTCTTTTTT
* * * **
93594 CGAGCATCTGAATCTTGTTTCAATTTATTTAGAAATTAATTCGGAAAAAAAAAAAAGAAAAAACG
449 CGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAAAAATGGAAAAAA-G
* * * *
93659 ATATTAAAAGCGTGAAAAGCCCGTTAATATTTTTGGCATTGAATTATATA-TATCTTCTGAGTAT
512 ATATTAGAAGTGTGAAAAGCCCGTCAATATTTTTGGCATTTAATTATATATTAT-TTCTGAGTAT
* * * * * **
93723 TGTGGCAAAAATTTGAG---AAAAACTTTT-AGGTCAGTTTTTAGCCAAAATAGTGTAATAATTA
576 TGTGCCAAAAAATTGAGAAAAAAAACTTTTCAGGTCAGTTTTTAGCCGAAATCGTGTACTAACCA
93784 TCACGG
641 TCACGG
* * * * * * * * *
93790 -TTTTGACTAAAAACGCATTTAGG-GCCACGACTCTATTTTGCATGGTTTTTGACTCCAAGACTC
1 TTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATTTTGCATGATTTTTGGCACAAAGACTC
93853 CTTGAAATATCT
66 CTTGAAATATCT
93865 TTTATTAGTC
Statistics
Matches: 1771, Mismatches: 197, Indels: 83
0.86 0.10 0.04
Matches are distributed among these distances:
637 36 0.02
638 3 0.00
639 260 0.15
640 129 0.07
641 274 0.15
642 5 0.00
643 6 0.00
644 15 0.01
645 339 0.19
646 68 0.04
647 27 0.02
648 66 0.04
649 39 0.02
650 130 0.07
651 359 0.20
652 15 0.01
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (646 bp):
TTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATTTTGCATGATTTTTGGCACAAAGACTC
CTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCG
AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGAAAAAAAAGGAAAAACGATATTAG
AAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTATTTCTGAGTATTGTGGCAA
AAAATTGAGAAAAAACTTTTCGGGTTAGTTTTTAGCCGAAATCGTGTAATAACCATCACGGTTTT
TGGCTAAAAATACATTTCGGAGCCCTGACTCAATTTTGCATGATTTTGACACAAATACTCCTTGA
AATATCTATATTCATCGAACCAAAACTCAGCCAAATTGGATATAAGGATTTCTTTTTTCGAGCAT
CTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAAATGGAAAAAAGATATTAGAA
GTGTGAAAAGCCCGTCAATATTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTGCCAAAA
AATTGAGAAAAAAAACTTTTCAGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGG
Found at i:93039 original size:322 final size:321
Alignment explanation
Indices: 91208--93864 Score: 3341
Period size: 323 Copynumber: 8.2 Consensus size: 321
91198 CCCGTAAATC
* ** * * * *
91208 TTTTTGGCTAAAAACGTGTTCCGGAGTCCCGACTCAATTTTGCAAGACTTTTGACGCAAAGACTC
1 TTTTTGGCTAAAAATGCATTTCGGAG-CCCGACTCAATTTTGCATGA-TTTTGGCACAAAGACTC
* ** * * * *
91273 CTTAAAATATCTATATTCATCGAACCAAATGTCAGCCACATTGAATATAAGGATTTGTTTTTTCG
64 CTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCG
91338 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGG--AAAAAATGGAAAAAACGATAT
129 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATGG-AAAAACGATAT
* * * * * * *
91401 TAGAAGCGTAAAAAGCCCGTAAATCTTTTTGGCATTGAATTCTATATT-TTGTCTGTGTACTGTG
193 TAGAAGTGTGAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTATT-TCTGAGTATTGTG
* ** * * * *
91465 GCAAAAAATTGAGAAAAAAAATTTCGGCTTACTTTTTAG-CTATAATCGTGTAATAACCATCACG
257 CCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGA-AATCGTGTAATAACCATCACG
91529 G
321 G
* ** * * * * *
91530 TTTTTGGCTAAAAACGTTTTTCGGAGCCCCAACTCAATTTTGCATGACTTTTGACGCAAAAACTT
1 TTTTTGGCTAAAAATGCATTTCGGAG-CCCGACTCAATTTTGCATGA-TTTTGGCACAAAGACTC
* * * ** * * * * * *
91595 CTTGAAAAATCTATATTAATCGATCCAAATGTTATGCCACAATGAATATAAGGATTTGTTTTTTC
64 CTTGAAATATCTATATTCATCGAACCAAAACTCA-GCAATATTGGATATAAGGATTTCTTTTTTC
* * *
91660 GAGAATCTCAATCTTGATTCGATTTGATTAGAAATTAATTCGGAAAAAAAAATGGAAAAACGATA
128 GAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAAAATGGAAAAACGATA
* * * * *
91725 TTAGAAGTGTGAAAAGTCTGTCAATATTTTTGGCGTTTAATTATATATTATTTCTGAGTACTGTG
192 TTAGAAGTGTGAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTG
* ** * *
91790 CCAAAAAATTGAAAAAAAAAAACTTTTTAGGTCAGTTTTTAGGCGAAATCGTGTACTAACCATCA
257 CCAAAAAATTG---AGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTAATAACCATCA
91855 CGG
319 CGG
*
91858 TTTTTGGCTAAAAATGCATTTCGGAGCCCCGACTCAATTTTGCATGATTTTTTGGCAAAAAGACT
1 TTTTTGGCTAAAAATGCATTTCGGAG-CCCGACTCAATTTTGCATGA--TTTTGGCACAAAGACT
91923 CCTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTC
63 CCTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTC
* ** *
91988 GAGCATCTCAAACTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAAAAA-GGGAAAACGATAT
128 GAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATGGAAAAACGATAT
* * *
92052 TAGAAGTGTGAAAAGTCCGTCAATCTTTTTGGCGTTTAATTATATATTATTTATGAGTATTGTGC
193 TAGAAGTGTGAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTGC
* * * *
92117 CAAAAAATTGAGAAATAACTTTTCGGGTCAGTTTTTATCCGAAATCGTGTACTAACCATCACAG
258 CAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTAATAACCATCACGG
* * * *
92181 TTTTTGGCTAAAAATACATTTCAGAGCCCTGGCTCAATTTTGCATGATATTTGGCACAAATACTC
1 TTTTTGGCTAAAAATGCATTTCGGAGCCC-GACTCAATTTTGCATGAT-TTTGGCACAAAGACTC
*
92246 CTTGAAATATCTATATTCATCAAACCAAAACTCAGCAA-ATTCTGGATATAAGGATTTCTTTTTT
64 CTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATA-T-TGGATATAAGGATTTCTTTTTT
*
92310 CGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATGGAAAAAAGATA
127 CGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATGGAAAAACGATA
* * * * *
92375 TTAGAAGTGTTAAAAGCACGTCAATCTTTTTTGCGTATAATTATATATTATTTCTGAGTATTGTG
192 TTAGAAGTGTGAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTG
* * *
92440 CCAAAATATCGAGAAAAAAAACTTTTCGGGTCAGTTTTTATCCGAAATCGTG---------TCAC
257 CCAAAAAATTGAG--AAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTAATAACCATCAC
92496 GG
320 GG
* **
92498 TTTTTGGCTAAAAATGCATTTCGGAGCCCCGGCTCAATTTTGCATGATATTTGGCACAATTACTC
1 TTTTTGGCTAAAAATGCATTTCGGAG-CCCGACTCAATTTTGCATGAT-TTTGGCACAAAGACTC
* *
92563 CTTGAAATATCTATATTCATCTAACCAAAACTCAGCAATATTGGATTTAAGGATTTCTTTTTTCG
64 CTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCG
* * *
92628 AGCATCTCAATTTTGTTTCGATTAAATTAAAAATTAATTCGGAAAAAAAAATGGAAAAACGATAT
129 AGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAAAATGGAAAAACGATAT
* * *
92693 TAGAAGTGTGAAAAGCCCGTCAATCTTTTTGGCGTTTAATTATATGTTATTTCTGAGTATTGTGG
193 TAGAAGTGTGAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTGC
* * *
92758 CAAAAAATTGAGAAAAAACTTTTCGGGTTAATTTTTAGCTGAAATCGTGTAATAACCATCACGG
258 CAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTAATAACCATCACGG
* *
92822 TTTTTGACTAAAAATGCATTTCGGAGCCCGACTCAATTTTGCATGATATTTGGCACAAATACTCC
1 TTTTTGGCTAAAAATGCATTTCGGAGCCCGACTCAATTTTGCATGAT-TTTGGCACAAAGACTCC
* **
92887 TTGAACTATCTATATTCATCGAATAAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCGA
65 TTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCGA
*
92952 GCATCTCAATTTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATGGAAAAACGATATTA
130 GCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATGGAAAAACGATATTA
* *
93017 GAAGT-TCGAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTATATATGAGTATTGTGCC
195 GAAGTGT-GAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTGCC
* * * *
93081 AAAAAATTGATAAAAAACTTTTCAGGTAAGTTTTTAGCCGAAATCGTGTACTAACCATCACGG
259 AAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTAATAACCATCACGG
93144 TTTTTGGCTAAAAATGCATTTCGGAGCCCGACTCAATTTTGCATGATTTTTGGCACAAAGACTCC
1 TTTTTGGCTAAAAATGCATTTCGGAGCCCGACTCAATTTTGCATGA-TTTTGGCACAAAGACTCC
93209 TTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCGA
65 TTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCGA
*
93274 GCATCTCAATCTTGTTTCGATTTAATTAGAAGTTAATTCGG---AAAAATGGAAAAACGATATTA
130 GCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATGGAAAAACGATATTA
* * * * * *
93336 GAAGCGTGAAAAGCCCGTCAATATTTTTGGCATTGAATTATATATTTTTTCTGTGTATTGTGGCA
195 GAAGTGTGAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTGCCA
* * * *
93401 AAAAATTGAGAAAAAACTTATCGGGTTAGTTTTTAGCTGAAATTGTGTACTAAATAACCATCACG
260 AAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTG---T-AATAACCATCACG
93466 G
321 G
* * * *
93467 TTTTTGGCTAAAAA--CGTTTCCGGAGCCTCGGCTCAATTTTGCATGATTTTAGACGCAAAGACT
1 TTTTTGGCTAAAAATGCATTT-CGGAGCC-CGACTCAATTTTGCATGATTTT-GGCACAAAGACT
* ** * * * *
93530 CCTTGAAATATCTATATTCATCGAATCAAATGTCAGCCACATTGGATATAAGGATTTGTTTTTAC
63 CCTTGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTC
* * * * *
93595 GAGCATCTGAATCTTGTTTCAATTTATTTAGAAATTAATTCGGAAAAAAAAAAAAGAAAAAACGA
128 GAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGG---AAAAAAAATGGAAAAACGA
* * * * *
93660 TATTAAAAGCGTGAAAAGCCCGTTAATATTTTTGGCATTGAATTATATA-TATCTTCTGAGTATT
190 TATTAGAAGTGTGAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTAT-TTCTGAGTATT
* * * * * **
93724 GTGGCAAAAATTTGAG-AAAAACTTTT-AGGTCAGTTTTTAGCCAAAATAGTGTAATAATTATCA
254 GTGCCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTAATAACCATCA
93787 CGG
319 CGG
* * * * * * * *
93790 -TTTTGACTAAAAACGCATTTAGG-GCCACGACTCTATTTTGCATGGTTTTTGACTCCAAGACTC
1 TTTTTGGCTAAAAATGCATTTCGGAGCC-CGACTCAATTTTGCAT-GATTTTGGCACAAAGACTC
93853 CTTGAAATATCT
64 CTTGAAATATCT
93865 TTTATTAGTC
Statistics
Matches: 2086, Mismatches: 200, Indels: 98
0.88 0.08 0.04
Matches are distributed among these distances:
315 33 0.02
316 62 0.03
317 191 0.09
318 4 0.00
319 117 0.06
320 1 0.00
321 7 0.00
322 506 0.24
323 534 0.26
324 116 0.06
325 72 0.03
326 130 0.06
327 28 0.01
328 157 0.08
329 128 0.06
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (321 bp):
TTTTTGGCTAAAAATGCATTTCGGAGCCCGACTCAATTTTGCATGATTTTGGCACAAAGACTCCT
TGAAATATCTATATTCATCGAACCAAAACTCAGCAATATTGGATATAAGGATTTCTTTTTTCGAG
CATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATGGAAAAACGATATTAG
AAGTGTGAAAAGCCCGTCAATCTTTTTGGCATTTAATTATATATTATTTCTGAGTATTGTGCCAA
AAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTAATAACCATCACGG
Found at i:93980 original size:31 final size:31
Alignment explanation
Indices: 93945--94045 Score: 120
Period size: 31 Copynumber: 3.4 Consensus size: 31
93935 CATGAGACAA
93945 GCCCTTATTTGAGCATTTTGGCAAACGTTGG
1 GCCCTTATTTGAGCATTTTGGCAAACGTTGG
** *
93976 GCCCTTATTTG-GCCACATT--CAAA-GATGG
1 GCCCTTATTTGAG-CATTTTGGCAAACGTTGG
* *
94004 GCCCTTATTTAAGCATTTTGGCAAACGTTAG
1 GCCCTTATTTGAGCATTTTGGCAAACGTTGG
94035 GCCCTTATTTG
1 GCCCTTATTTG
94046 GCCAAATTAA
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
28 18 0.32
29 5 0.09
30 5 0.09
31 28 0.50
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (31 bp):
GCCCTTATTTGAGCATTTTGGCAAACGTTGG
Found at i:94019 original size:59 final size:60
Alignment explanation
Indices: 93945--94105 Score: 234
Period size: 59 Copynumber: 2.7 Consensus size: 60
93935 CATGAGACAA
* * *
93945 GCCCTTATTTGAGCATTTTGGCAAACGTTGGGCCCTTATTTGGCCACATTCAAAGAT-GG
1 GCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGG
*
94004 GCCCTTATTTAAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGG
1 GCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGG
* * * * *
94064 ACCCTTATTTGAGCATTTTGGTAAACATTAGACCATTATTTG
1 GCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTG
94106 AGCAATTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
59 53 0.58
60 38 0.42
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (60 bp):
GCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGG
Found at i:94531 original size:33 final size:33
Alignment explanation
Indices: 94486--94560 Score: 132
Period size: 33 Copynumber: 2.3 Consensus size: 33
94476 GATGACCCGT
*
94486 GCCGCCCTAGGAGGGTGGCTTACCATGGCTCAA
1 GCCGCCCCAGGAGGGTGGCTTACCATGGCTCAA
94519 GCCGCCCCAGGAGGGTGGCTTACCATGGCTCAA
1 GCCGCCCCAGGAGGGTGGCTTACCATGGCTCAA
*
94552 GCCACCCCA
1 GCCGCCCCA
94561 CTGGGGCGGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.19, C:0.36, G:0.31, T:0.15
Consensus pattern (33 bp):
GCCGCCCCAGGAGGGTGGCTTACCATGGCTCAA
Found at i:94663 original size:33 final size:33
Alignment explanation
Indices: 94621--94771 Score: 196
Period size: 33 Copynumber: 4.6 Consensus size: 33
94611 AAAATTGTTT
* *
94621 AGCCGTCCTAGTGGGGAGGCTCCATCGTGGCAG
1 AGCCGTCCTAGTGGGGAGGCTCCACCGTGGCGG
* * **
94654 AGCCGTCCTAGTGGGGAGGCTCCGCCATGGTTG
1 AGCCGTCCTAGTGGGGAGGCTCCACCGTGGCGG
* * *
94687 AGCC-TCCCTAATGGGGAGCCTCCGCCGTGGCGG
1 AGCCGT-CCTAGTGGGGAGGCTCCACCGTGGCGG
*
94720 AGCCGTACTAGTGGGGAGGCTCCACCGTGGCGG
1 AGCCGTCCTAGTGGGGAGGCTCCACCGTGGCGG
94753 AGCCGTCCTAGTGGGGAGG
1 AGCCGTCCTAGTGGGGAGG
94772 TTGGTGTAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
32 1 0.01
33 99 0.98
34 1 0.01
ACGTcount: A:0.14, C:0.28, G:0.40, T:0.17
Consensus pattern (33 bp):
AGCCGTCCTAGTGGGGAGGCTCCACCGTGGCGG
Found at i:95249 original size:26 final size:26
Alignment explanation
Indices: 95220--97904 Score: 398
Period size: 31 Copynumber: 96.1 Consensus size: 26
95210 ACTTGACTCA
* *
95220 TACTAGATATGTAACTACATGTGCCC
1 TACTAGATATGCAACTACATGAGCCC
* * *
95246 TACT-GAACATGCACCTGCATGTGAGCCC
1 TACTAG-ATATGCAACTACA--TGAGCCC
* * *
95274 TAC-AGAATCTGCAACTATATGAGCGC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
95300 TACTGGATATGCAACTAAATG-GCCTC
1 TACTAGATATGCAACTACATGAGCC-C
* *
95326 TACTAAATATGCAACTATATGAGCCC
1 TACTAGATATGCAACTACATGAGCCC
* *
95352 TACTAAATATGCAACTATATGATATGAGCCC
1 TACTAGATATGCAAC----T-ACATGAGCCC
*
95383 TACT-GAATATGCAACTATATGGTCTGAGCCC
1 TACTAG-ATATGCAACTACA-----TGAGCCC
*
95414 TACT-GAATATGCAACTATATTGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
95445 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
95476 TACT-GAATATGCAACTATATGAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
95502 TACTGGATATGCAACTATATGAGCCC
1 TACTAGATATGCAACTACATGAGCCC
* * * *
95528 TATTGGATATGTAACTATATG-GCCC
1 TACTAGATATGCAACTACATGAGCCC
* *
95553 TACT-GAATTTGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* *
95584 TGCT-GAATATGCAACTATATGGTAAGAACCC
1 TACTAG-ATATGCAACTACAT-G--AG--CCC
*
95615 TACT-GAATATGCAACTATATGGTACGAGCCC
1 TACTAG-ATATGCAACTACA---T--GAGCCC
* *
95646 TACT-GAATATGCAACTATATGAGCAC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
95672 TACT-GAATATGCAACTATATGAGCAC
1 TACTAG-ATATGCAACTACATGAGCCC
*
95698 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* *
95729 TGCT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* *
95760 CACT-GAATATGCAACTATATGGTATGAACCC
1 TACTAG-ATATGCAACTACAT-G-A-G--CCC
* *
95791 TACT-GAATATGCAACTATATGAGCCT
1 TACTAG-ATATGCAACTACATGAGCCC
* *
95817 TACT-GAATATGCAACTATATGAGCCT
1 TACTAG-ATATGCAACTACATGAGCCC
* *
95843 TAC-AGAATATGCAACTATATGCTGTGAACCC
1 TACTAG-ATATGCAAC--TA--C-ATGAGCCC
* *
95874 TACT-GAATATGCAACTATATGAGCCA
1 TACTAG-ATATGCAACTACATGAGCCC
* *
95900 TACT-GAATATGCAACAATATGGTATGAACCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
95931 TACT-GAATATGCAACTATATGA-CCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
95956 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* *
95987 AACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* *
96018 TACT-GAATATGCGA-TATATG-GCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* * *
96042 TA-TTGAATATGCAAATATATGGTATGAGCCC
1 TACTAG-ATATGC-AA-CTA---CATGAGCCC
*
96073 TACT-GAATATGCAACTATATGAG-CC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
96098 TACT-GAATATGCAACTATATGGTATGAGCCT
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* * *
96129 TAC-CGAATATGCAACTATACGAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
96155 TACT-GAATATGCAACTATATGA-CCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
96180 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* *
96211 TACT-GAATATGCAACTATATAAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
96237 TAC-AGAATATGTAACTATATGAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
96263 TACT-GAATATGCAACTATATAAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* **
96289 TAC-AGAATATG-TACATGGTATGAGCCC
1 TACTAG-ATATGCAAC-T-ACATGAGCCC
*
96316 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
96347 TACT-GAATATGCAACTATC-TGAGCTC
1 TACTAG-ATATGCAACTA-CATGAGCCC
*
96373 TACT-GAATATGCAACTATATGTATGGCCC
1 TACTAG-ATATGCAACTACATG-A--GCCC
* *
96402 TACT-GAATATGCAACTATATGAGCTC
1 TACTAG-ATATGCAACTACATGAGCCC
*
96428 TAC-AGAATATATGCAACTATATGGTATGAGCCC
1 TACTAG---ATATGCAAC--TA---CATGAGCCC
*
96461 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* * *
96492 TAC-GGAATATGCAACTATATGAGCTC
1 TACTAG-ATATGCAACTACATGAGCCC
* * *
96518 TGCT-GAATATGCAACTATATGAGCCT
1 TACTAG-ATATGCAACTACATGAGCCC
*
96544 TACT-GAATATGCAACTATATGGTTTGAGCCC
1 TACTAG-ATATGCAACTACA-----TGAGCCC
* *
96575 TTCT-GAATATGCAACTATATGAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
96601 TACT-GAATATGCAACAATATGGTATGAACCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
96632 TACT-GAATATGCAACTATATGAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* * *
96658 TA-TTGAATATGCAAATATATGA-CCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
96683 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* * *
96714 TACT-GAATATGCAAATATATGGTATGAGCCA
1 TACTAG-ATATGC-AA-CTA---CATGAGCCC
*
96745 TACT-GAATATGCAACTATAT-AGCCCC
1 TACTAG-ATATGCAACTACATGAG-CCC
*
96771 TACT-GAATATGCAACTATATGAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* * * *
96797 TACTAAATATGCAACTATATGGTATGAGTCG
1 TACTAGATATGCAAC--TA---CATGAGCCC
*
96828 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
96859 TACT-GAATATGCAACTATATGGTATGACCCC
1 TACTAG-ATATGCAACTACAT-G-A-G--CCC
*
96890 TACT-GAATATGCAACTATATGAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
96916 TACT-GAATATGCAACTATAAG-GCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* * *
96941 TGCT-GAATTTGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* *
96972 TGCT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* *
97003 TGCT-GAATATGCAACTATATTGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
97034 TACT-GAATATGCAACTATATGGTATGAACCC
1 TACTAG-ATATGCAACTACAT-G-A-G--CCC
*
97065 TACT-GAATATGCAACTATATGGTATGAACCC
1 TACTAG-ATATGCAACTACAT-G-A-G--CCC
* *
97096 TACT-GAATATGCAACTATATAAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
97122 TACT-GAATATGCAACTATATGAGCCT
1 TACTAG-ATATGCAACTACATGAGCCC
*
97148 TACT-GAATATGCAACTATATGGTGTGAGCCC
1 TACTAG-ATATGCAACTACA-----TGAGCCC
*
97179 TACT-GAATATGCAACTATATGAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* * *
97205 TACTAAATATGCAACAATATGGTATGAACCC
1 TACTAGATATGCAAC--TA---CATGAGCCC
*
97236 TACT-GAATATGCAACTATATGAGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* * *
97262 TA-TTGAATATGCAACTATATGACCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
97288 TACT-GAATATGCAAATATATGA-CCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
97313 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
97344 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
97375 TACT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
97406 TACT-GAATATGCAACTATATG-GCCC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
97431 TACT-GAATTTGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
* *
97462 TGCT-GAATATGCAACTATATGGTATGAGCCC
1 TACTAG-ATATGCAAC--TA---CATGAGCCC
*
97493 TACT-GAATATGCAACTACATGACCCC
1 TACTAG-ATATGCAACTACATGAGCCC
97519 TACT-GAATATGCAACTACATGA-CCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
97544 TACT-GAATATGCAACTACATG-TCCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
97569 TACT-GAATATGCAACTACATGTA-CCT
1 TACTAG-ATATGCAACTACATG-AGCCC
*
97595 TACT-GAATATGCAACTACATGA-CCT
1 TACTAG-ATATGCAACTACATGAGCCC
* * *
97620 TAC-CGAATATGCAATTATATTG-GCTCC
1 TACTAG-ATATGCAACTACA-TGAGC-CC
* *
97647 TA-TTGAATATGCAACTACATGA-TCC
1 TACTAG-ATATGCAACTACATGAGCCC
* *
97672 TATTAAATATGCAACTACATGTA-CCC
1 TACTAGATATGCAACTACATG-AGCCC
*
97698 TGCT-GAATATGCAACTACATGA-CCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
97723 TACT-GAATATGCAACTACATGTA-CTC
1 TACTAG-ATATGCAACTACATG-AGCCC
*
97749 TACT-GAATATGTAACTACATGA-CCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
97774 TACT-GAATATGCAACTACATGTA-CTC
1 TACTAG-ATATGCAACTACATG-AGCCC
*
97800 TACT-GAATATGTAACTACATGA-CCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
97825 TACT-GAATATGCAACTACATGTA-CTC
1 TACTAG-ATATGCAACTACATG-AGCCC
*
97851 TACT-GAATATGTAACTACATGA-CCC
1 TACTAG-ATATGCAACTACATGAGCCC
*
97876 TACT-GAATATGCAACTACATGTGCCC
1 TACTAG-ATATGCAACTACATGAGCCC
97902 TAC
1 TAC
97905 ATGACCCTAC
Statistics
Matches: 2307, Mismatches: 148, Indels: 408
0.81 0.05 0.14
Matches are distributed among these distances:
23 1 0.00
24 15 0.01
25 328 0.14
26 814 0.35
27 66 0.03
28 52 0.02
29 68 0.03
30 50 0.02
31 890 0.39
32 3 0.00
33 16 0.01
34 1 0.00
35 1 0.00
36 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (26 bp):
TACTAGATATGCAACTACATGAGCCC
Found at i:95380 original size:31 final size:31
Alignment explanation
Indices: 95342--97514 Score: 2022
Period size: 31 Copynumber: 76.0 Consensus size: 31
95332 ATATGCAACT
*
95342 ATATGAGCCCTACTAAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
95373 ATATGAGCCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
95404 GTCTGAGCCCTACTGAATATGCAACTATATTG
1 ATATGAGCCCTACTGAATATGCAACTATA-TG
95436 -TATGAGCCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
95466 GTATGAGCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
95492 ATATGAGCCCTACTGGATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* * *
95518 ATATGAGCCCTATTGGATATGTAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
95544 ATATG-GCCCTACTGAATTTGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
95574 GTATGAGCCCTGCTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* * *
95605 GTAAGAACCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
95636 GTACGAGCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
95662 ATATGAGCACTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
95688 ATATGAGCACTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
95719 GTATGAGCCCTGCTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
95750 GTATGAGCCCCACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
95781 GTATGAACCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
95807 ATATGAGCCTTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
95833 ATATGAGCCTTACAGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* * *
95864 CTGTGAACCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
95890 ATATGAGCCATACTGAATATGCAACAATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
95921 GTATGAACCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
95947 ATATGA-CCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
95977 GTATGAGCCCAACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96008 GTATGAGCCCTACTGAATATG---C--GAT-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96033 ATATG-GCCCTATTGAATATGCAAATATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96063 GTATGAGCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
96089 ATATGAG-CCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* * *
96119 GTATGAGCCTTACCGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96145 ATACGAGCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
96171 ATATGA-CCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96201 GTATGAGCCCTACTGAATATGCAAC--TAT-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96229 ATA--AGCCCTACAGAATATGTAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
96253 ATATGAGCCCTACTGAATATGCAAC--TAT-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96281 ATA--AGCCCTACAGAATATG----TACATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96306 GTATGAGCCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96337 GTATGAGCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96363 ATCTGAGCTCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
96394 -TATG-GCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96418 ATATGAGCTCTACAGAATATATGCAACTATATG
1 ATATGAGCCCTACTG-A-ATATGCAACTATATG
*
96451 GTATGAGCCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96482 GTATGAGCCCTACGGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96508 ATATGAGCTCTGCTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96534 ATATGAGCCTTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* * *
96565 GTTTGAGCCCTTCTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96591 ATATGAGCCCTACTGAATATGCAACAATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96622 GTATGAACCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96648 ATATGAGCCCTATTGAATATGC-A--A-AT-
1 ATATGAGCCCTACTGAATATGCAACTATATG
96674 ATATGA-CCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96704 GTATGAGCCCTACTGAATATGCAAATATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96735 GTATGAGCCATACTGAATATGCAAC--TAT-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96763 ATA-G-CCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96787 ATATGAGCCCTACTAAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* * *
96818 GTATGAGTCGTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
96849 GTATGAGCCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96880 GTATGACCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
96906 ATATGAGCCCTACTGAATATGCAAC--TAT-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96934 A-A-G-GCCCTGCTGAATTTGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96962 GTATGAGCCCTGCTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
96993 GTATGAGCCCTGCTGAATATGCAACTATATTG
1 ATATGAGCCCTACTGAATATGCAACTATA-TG
97025 -TATGAGCCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
97055 GTATGAACCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
97086 GTATGAACCCTACTGAATATGCAAC--TAT-
1 ATATGAGCCCTACTGAATATGCAACTATATG
97114 ATA--AGCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
97138 ATATGAGCCTTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
97169 GTGTGAGCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
97195 ATATGAGCCCTACTAAATATGCAACAATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
97226 GTATGAACCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
97252 ATATGAGCCCTATTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
97278 ATATGACCCCTACTGAATATGC-A--A-AT-
1 ATATGAGCCCTACTGAATATGCAACTATATG
97304 ATATGA-CCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
97334 GTATGAGCCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
97365 GTATGAGCCCTACTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
97396 GTATGAGCCCTACTGAATATGCAAC----T-
1 ATATGAGCCCTACTGAATATGCAACTATATG
*
97422 ATATG-GCCCTACTGAATTTGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
97452 GTATGAGCCCTGCTGAATATGCAACTATATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
* *
97483 GTATGAGCCCTACTGAATATGCAACTACATG
1 ATATGAGCCCTACTGAATATGCAACTATATG
97514 A
1 A
97515 CCCCTACTGA
Statistics
Matches: 1847, Mismatches: 159, Indels: 272
0.81 0.07 0.12
Matches are distributed among these distances:
24 28 0.02
25 146 0.08
26 555 0.30
27 36 0.02
28 24 0.01
29 39 0.02
30 55 0.03
31 946 0.51
32 6 0.00
33 12 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (31 bp):
ATATGAGCCCTACTGAATATGCAACTATATG
Found at i:95401 original size:57 final size:57
Alignment explanation
Indices: 95267--97948 Score: 2157
Period size: 57 Copynumber: 47.8 Consensus size: 57
95257 CACCTGCATG
* * * *
95267 TGAGCCCTACAGAATCTGCAACTATATGAGCGCTACTGGATATGCAAC--TA--A-A
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* *
95319 TG-GCCTCTACTAAATATGCAACTATATGAGCCCTACTAAATATGCAACTATATGATA
1 TGAGCC-CTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
95376 TGAGCCCTACTGAATATGCAACTATATGGTCTGAGCCCTACTGAATATGCAACTATATTG-TA
1 TGAGCCCTACTGAATATGCAACTATA-----TGAGCCCTACTGAATATGCAACTATA-TGATA
95438 TGAGCCCTACTGAATATGCAACTATATGGTATGAGCCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
* * * *
95495 TGAGCCCTACTGGATATGCAACTATATGAGCCCTATTGGATATGTAAC----T-ATA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * *
95547 TG-GCCCTACTGAATTTGCAACTATATGGTATGAGCCCTGCTGAATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
* *
95608 AGAACCCTACTGAATATGCAACTATATGGTACGAGCCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAACTATA---T--GAGCCCTACTGAATATGCAACTATATGATA
* * *
95665 TGAGCACTACTGAATATGCAACTATATGAGCACTACTGAATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * *
95722 TGAGCCCTGCTGAATATGCAACTATATGGTATGAGCCCCACTGAATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
* *
95784 TGAACCCTACTGAATATGCAACTATATGAGCCTTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * *
95836 TGAGCCTTACAGAATATGCAACTATATGCTGTGAACCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAACTATA-----TGAGCCCTACTGAATATGCAACTATATGATA
* *
95893 TGAGCCATACTGAATATGCAACAATATGGTATGAACCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
* *
95950 TGA-CCCTACTGAATATGCAACTATATGGTATGAGCCCAACTGAATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
* * * *
96011 TGAGCCCTACTGAATATGCGA-TATATG-GCCCTATTGAATATGCAAATATATGGTA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
*
96066 TGAGCCCTACTGAATATGCAACTATATGAG-CCTACTGAATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * *
96122 TGAGCCTTACCGAATATGCAACTATACGAGCCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
96174 TGA-CCCTACTGAATATGCAACTATATGGTATGAGCCCTACTGAATATGCAAC--TAT-ATA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
* *
96232 --AGCCCTACAGAATATGTAACTATATGAGCCCTACTGAATATGCAAC--TAT-ATA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * * *
96284 --AGCCCTACAGAATATG-TACATGGTATGAGCCCTACTGAATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAAC-T-ATATGAGCCCTACTGAATATGCAACTATATGATA
* *
96340 TGAGCCCTACTGAATATGCAACTATCTGAGCTCTACTGAATATGCAACTATATG-TA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * *
96396 TG-GCCCTACTGAATATGCAACTATATGAGCTCTACAGAATATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTG-A-ATATGCAACTATATGATA
*
96454 TGAGCCCTACTGAATATGCAACTATATGGTATGAGCCCTACGGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
* * * * *
96511 TGAGCTCTGCTGAATATGCAACTATATGAGCCTTACTGAATATGCAACTATATGGTT
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * *
96568 TGAGCCCTTCTGAATATGCAACTATATGAGCCCTACTGAATATGCAACAATATGGTA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* *
96625 TGAACCCTACTGAATATGCAACTATATGAGCCCTATTGAATATGC-A--A-AT-ATA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* *
96677 TGA-CCCTACTGAATATGCAACTATATGGTATGAGCCCTACTGAATATGCAAATATATGGTA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
*
96738 TGAGCCATACTGAATATGCAACTATAT-AGCCCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAACTATATGAG-CCCTACTGAATATGCAACTATATGATA
* * * *
96790 TGAGCCCTACTAAATATGCAACTATATGGTATGAGTCGTACTGAATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
96852 TGAGCCCTACTGAATATGCAACTATATGGTATGACCCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAACTATAT-G-A-G--CCCTACTGAATATGCAACTATATGATA
* * * *
96909 TGAGCCCTACTGAATATGCAACTATAAG-GCCCTGCTGAATTTGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* *
96965 TGAGCCCTGCTGAATATGCAACTATATGGTATGAGCCCTGCTGAATATGCAACTATATTG-TA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATA-TGATA
*
97027 TGAGCCCTACTGAATATGCAACTATATGGTATGAACCCTACTGAATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAACTATAT-G-A-G--CCCTACTGAATATGCAACTATATGATA
* *
97089 TGAACCCTACTGAATATGCAACTATATAAGCCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
*
97141 TGAGCCTTACTGAATATGCAACTATATGGTGTGAGCCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAACTATA-----TGAGCCCTACTGAATATGCAACTATATGATA
* *
97198 TGAGCCCTACTAAATATGCAACAATATGGTATGAACCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
* *
97255 TGAGCCCTATTGAATATGCAACTATATGACCCCTACTGAATATGC-A--A-AT-ATA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
*
97307 TGA-CCCTACTGAATATGCAACTATATGGTATGAGCCCTACTGAATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
97368 TGAGCCCTACTGAATATGCAACTATATGGTATGAGCCCTACTGAATATGCAAC----T-ATA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
* * *
97425 TG-GCCCTACTGAATTTGCAACTATATGGTATGAGCCCTGCTGAATATGCAACTATATGGTA
1 TGAGCCCTACTGAATATGCAAC--TA---TATGAGCCCTACTGAATATGCAACTATATGATA
* * *
97486 TGAGCCCTACTGAATATGCAACTACATGACCCCTACTGAATATGCAAC----T-ACA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * *
97538 TGA-CCCTACTGAATATGCAACTACATG-TCCCTACTGAATATGCAACTACATG---
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * * *
97590 T-A-CCTTACTGAATATGCAACTACATGA-CCTTACCGAATATGCAA-T-TAT-AT-
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * * * * *
97640 TG-GCTCCTATTGAATATGCAACTACATGA-TCCTATTAAATATGCAACTACATG---
1 TGAGC-CCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * *
97693 T-A-CCCTGCTGAATATGCAACTACATGA-CCCTACTGAATATGCAACTACATG---
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * * *
97744 T-A-CTCTACTGAATATGTAACTACATGA-CCCTACTGAATATGCAACTACATG---
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * * *
97795 T-A-CTCTACTGAATATGTAACTACATGA-CCCTACTGAATATGCAACTACATG---
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
* * * * *
97846 T-A-CTCTACTGAATATGTAACTACATGA-CCCTACTGAATATGCAACTACATGTGCCCTACA
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACT--ATATG----ATA
** *
97906 TGA-CCCTACTGAATATGCAACTGCATGACCCCTACTGAATATG
1 TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATG
97949 TAGGTACATG
Statistics
Matches: 2267, Mismatches: 168, Indels: 380
0.81 0.06 0.13
Matches are distributed among these distances:
49 2 0.00
50 20 0.01
51 342 0.15
52 304 0.13
53 45 0.02
54 9 0.00
55 90 0.04
56 275 0.12
57 592 0.26
58 37 0.02
59 34 0.01
60 24 0.01
61 53 0.02
62 419 0.18
63 5 0.00
64 14 0.01
67 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (57 bp):
TGAGCCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTATATGATA
Found at i:97939 original size:36 final size:36
Alignment explanation
Indices: 97865--97940 Score: 125
Period size: 36 Copynumber: 2.1 Consensus size: 36
97855 GAATATGTAA
**
97865 CTACATGACCCTACTGAATATGCAACTACATGTGCC
1 CTACATGACCCTACTGAATATGCAACTACATGACCC
*
97901 CTACATGACCCTACTGAATATGCAACTGCATGACCC
1 CTACATGACCCTACTGAATATGCAACTACATGACCC
97937 CTAC
1 CTAC
97941 TGAATATGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.24
Consensus pattern (36 bp):
CTACATGACCCTACTGAATATGCAACTACATGACCC
Found at i:97958 original size:26 final size:25
Alignment explanation
Indices: 97901--97969 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 25
97891 TACATGTGCC
97901 CTACATGACCCTACTGAATATGCAA
1 CTACATGACCCTACTGAATATGCAA
* * *
97926 CTGCATGACCCCTACTGAATATGTAG
1 CTACATGA-CCCTACTGAATATGCAA
* *
97952 GTACATGACACTACTGAA
1 CTACATGACCCTACTGAA
97970 CATGATTTAC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
25 16 0.43
26 21 0.57
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (25 bp):
CTACATGACCCTACTGAATATGCAA
Found at i:98017 original size:33 final size:33
Alignment explanation
Indices: 97962--98042 Score: 90
Period size: 33 Copynumber: 2.5 Consensus size: 33
97952 GTACATGACA
*
97962 CTACTGAACATGATTTACGTGATACAAATGGCC
1 CTACTGAACATGAATTACGTGATACAAATGGCC
* * * * *
97995 CTACTGAAGATGAATTATGTGATGCATATGGTC
1 CTACTGAACATGAATTACGTGATACAAATGGCC
* *
98028 CTATTGAATATGAAT
1 CTACTGAACATGAAT
98043 ATGAACTACG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (33 bp):
CTACTGAACATGAATTACGTGATACAAATGGCC
Found at i:98139 original size:57 final size:57
Alignment explanation
Indices: 98040--98148 Score: 141
Period size: 57 Copynumber: 1.9 Consensus size: 57
98030 ATTGAATATG
** *
98040 AATATGAACTACGTGATGTGATGCGCATGACCCTACTGAATATAAATTACGTTGCAT
1 AATATGAACTACGTGATGTGATGCGCATGACCCTACCAAATATAAACTACGTTGCAT
* *
98097 AATATGAACTACGTGATGTGATGCAG-ATG-GCCTCACCAAATATGAACTACGT
1 AATATGAACTACGTGATGTGATGC-GCATGACCCT-ACCAAATATAAACTACGT
98149 GATGAATATG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
56 3 0.07
57 41 0.91
58 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (57 bp):
AATATGAACTACGTGATGTGATGCGCATGACCCTACCAAATATAAACTACGTTGCAT
Found at i:99196 original size:231 final size:231
Alignment explanation
Indices: 98792--99261 Score: 791
Period size: 231 Copynumber: 2.0 Consensus size: 231
98782 CTCACTAGAA
* * *
98792 CAAAAGTAATACAGACAACTTGTAGCAGACTTACCTCATCTACACAGCGGGTTTGCCCTAGCCAC
1 CAAAAGTAATACAGACAACTTCTAGAAGACTTACCTCATCTACACAGCAGGTTTGCCCTAGCCAC
98857 CAAGATGATACCCAAAGCCTGCTCCTTAAGGGATGGGTGCAATTAGCCACAATATTCTCAAATGT
66 CAAGATGATACCCAAAGCCTGCTCCTTAAGGGATGGGTGCAATTAGCCACAATATTCTCAAATGT
* **
98922 GGCATGATGGTGGACCACCATATCTCTGAAAGGGGGGATTGCAAGTGAATATAATACCAAATATA
131 GGCATGATGATGGACCACCATATCTCTGAAAGGGGAAATTGCAAGTGAATATAATACCAAATATA
* *
98987 CTATCTCAGA-TTTAAAAGTAGACTAATACGATTAAC
196 CCAACTCAGATTTTAAAA-TAGACTAATACGATTAAC
*
99023 CAAAAGTAATACAGACAACTTCTAGAAGACTTACCTCATCTATACAGCAGGTTTGCCCTAGCCAC
1 CAAAAGTAATACAGACAACTTCTAGAAGACTTACCTCATCTACACAGCAGGTTTGCCCTAGCCAC
*
99088 CAAGATGATACCCAAAGCCTGCTCCTTGAGGGATGGGTGCAATTAGCCACAATATTCTCAAATGT
66 CAAGATGATACCCAAAGCCTGCTCCTTAAGGGATGGGTGCAATTAGCCACAATATTCTCAAATGT
* *
99153 GGCATGATGATGGACCACCATATCTCTGAAAGGGGAAATTGCAAGTTAATATGATACCAAATATA
131 GGCATGATGATGGACCACCATATCTCTGAAAGGGGAAATTGCAAGTGAATATAATACCAAATATA
* *
99218 CCAACTCAGATTTTAAAATAGACTACTATGATTAAC
196 CCAACTCAGATTTTAAAATAGACTAATACGATTAAC
99254 C-AAAGTAA
1 CAAAAGTAA
99262 CCTGCATGTG
Statistics
Matches: 224, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
230 7 0.03
231 210 0.94
232 7 0.03
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (231 bp):
CAAAAGTAATACAGACAACTTCTAGAAGACTTACCTCATCTACACAGCAGGTTTGCCCTAGCCAC
CAAGATGATACCCAAAGCCTGCTCCTTAAGGGATGGGTGCAATTAGCCACAATATTCTCAAATGT
GGCATGATGATGGACCACCATATCTCTGAAAGGGGAAATTGCAAGTGAATATAATACCAAATATA
CCAACTCAGATTTTAAAATAGACTAATACGATTAAC
Found at i:101327 original size:15 final size:14
Alignment explanation
Indices: 101286--101320 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
101276 TCGGTGTCGG
*
101286 TCGGTATCGGTTTTT
1 TCGGT-TCGATTTTT
101301 TCGGTTCGATTTTT
1 TCGGTTCGATTTTT
101315 TCGGTT
1 TCGGTT
101321 TTTATTTAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.06, C:0.14, G:0.26, T:0.54
Consensus pattern (14 bp):
TCGGTTCGATTTTT
Found at i:102134 original size:34 final size:34
Alignment explanation
Indices: 102091--102187 Score: 194
Period size: 34 Copynumber: 2.9 Consensus size: 34
102081 ATCCGCTGTC
102091 CTATTCTCTTCACGGAATATATGTTGGATCCTCA
1 CTATTCTCTTCACGGAATATATGTTGGATCCTCA
102125 CTATTCTCTTCACGGAATATATGTTGGATCCTCA
1 CTATTCTCTTCACGGAATATATGTTGGATCCTCA
102159 CTATTCTCTTCACGGAATATATGTTGGAT
1 CTATTCTCTTCACGGAATATATGTTGGAT
102188 ATTAGATTTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 63 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (34 bp):
CTATTCTCTTCACGGAATATATGTTGGATCCTCA
Found at i:102211 original size:2 final size:2
Alignment explanation
Indices: 102204--102237 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
102194 TTTTGGGAGC
102204 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102238 TCTTTAGGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:109406 original size:31 final size:30
Alignment explanation
Indices: 109352--109418 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 30
109342 CAAAAAGCGA
*
109352 TCAATTTGTTAATGTACTCACAAGATTAAG
1 TCAATTTGTTAATATACTCACAAGATTAAG
* * *
109382 TCAATTTAGTTCATATATTCACAAGATTAGG
1 TCAATTT-GTTAATATACTCACAAGATTAAG
109413 TCAATT
1 TCAATT
109419 GAGTCCAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (30 bp):
TCAATTTGTTAATATACTCACAAGATTAAG
Found at i:120677 original size:3 final size:3
Alignment explanation
Indices: 120669--120707 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
120659 ACCATCTCAT
120669 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
120708 CCCAATTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:121669 original size:2 final size:2
Alignment explanation
Indices: 121662--121695 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
121652 AATAATAATC
121662 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121696 CACAAACTCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:129954 original size:21 final size:21
Alignment explanation
Indices: 129930--129969 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
129920 GTATTAATTT
129930 AAAA-GTAAACGAAAAATAATG
1 AAAATGTAAAC-AAAAATAATG
*
129951 AAAATGTAAACAAGAATAA
1 AAAATGTAAACAAAAATAA
129970 GGGGAAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.68, C:0.05, G:0.12, T:0.15
Consensus pattern (21 bp):
AAAATGTAAACAAAAATAATG
Found at i:137171 original size:18 final size:19
Alignment explanation
Indices: 137137--137182 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
137127 TCCTTCCATT
137137 ATTAATATATATATTATTA
1 ATTAATATATATATTATTA
137156 ATTAATA-ATA-ATTTATTA
1 ATTAATATATATA-TTATTA
*
137174 ATTAGTATA
1 ATTAATATA
137183 CATACATACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 1 0.04
18 15 0.62
19 8 0.33
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (19 bp):
ATTAATATATATATTATTA
Found at i:138211 original size:31 final size:31
Alignment explanation
Indices: 138117--138227 Score: 132
Period size: 31 Copynumber: 3.5 Consensus size: 31
138107 ACGGTATCCG
* *
138117 ACGTGGCATGCCACGTGTACAAAAAAGTGAC
1 ACGTGGCACGCCACGTGTACCAAAAAGTGAC
* * * *
138148 ATGTGGTACGCCAAGTGTATCAAACAAGTGAC
1 ACGTGGCACGCCACGTGTACCAAA-AAGTGAC
* *
138180 ACGTGTCACGCCACGTGTACCCAAAAGTGAC
1 ACGTGGCACGCCACGTGTACCAAAAAGTGAC
*
138211 ACGTGGCATGCCACGTG
1 ACGTGGCACGCCACGTG
138228 CACAAAAGGA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
31 40 0.62
32 25 0.38
ACGTcount: A:0.31, C:0.25, G:0.26, T:0.18
Consensus pattern (31 bp):
ACGTGGCACGCCACGTGTACCAAAAAGTGAC
Found at i:139468 original size:26 final size:27
Alignment explanation
Indices: 139419--139469 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
139409 AATAGAGAAA
*
139419 GAGACAATTAAAAAGGAACAAGAGGTT
1 GAGACAATTAAAAAGAAACAAGAGGTT
139446 GAGACAATTAAAAAGAAAC-AGAGG
1 GAGACAATTAAAAAGAAACAAGAGG
139470 GAGTATGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.55, C:0.08, G:0.25, T:0.12
Consensus pattern (27 bp):
GAGACAATTAAAAAGAAACAAGAGGTT
Found at i:140504 original size:2 final size:2
Alignment explanation
Indices: 140499--140523 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
140489 ATTTTTTTAA
140499 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
140524 GTTTTAATCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:145607 original size:16 final size:19
Alignment explanation
Indices: 145588--145626 Score: 57
Period size: 16 Copynumber: 2.2 Consensus size: 19
145578 TTTCCTAGCC
145588 ATATTTT-TTTA-TA-AAT
1 ATATTTTATTTAGTATAAT
145604 ATATTTTATTTAGTATAAT
1 ATATTTTATTTAGTATAAT
145623 ATAT
1 ATAT
145627 ATTGTACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 4 0.20
18 2 0.10
19 7 0.35
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
ATATTTTATTTAGTATAAT
Found at i:150473 original size:6 final size:6
Alignment explanation
Indices: 150462--150498 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
150452 AAATTGACAC
150462 AGAAAA AGAAAA AGAAAA AGAAAAA AGAAAAA AGAAA
1 AGAAAA AGAAAA AGAAAA AG-AAAA AG-AAAA AGAAA
150499 GAGCCATTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 17 0.57
7 13 0.43
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:150479 original size:12 final size:12
Alignment explanation
Indices: 150462--150498 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 12
150452 AAATTGACAC
150462 AGAAAAAGAAAA
1 AGAAAAAGAAAA
150474 AGAAAAAGAAAAA
1 AGAAAAAG-AAAA
150487 AGAAAAAAGAAA
1 AG-AAAAAGAAA
150499 GAGCCATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 8 0.35
13 9 0.39
14 6 0.26
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAAAA
Found at i:150480 original size:7 final size:7
Alignment explanation
Indices: 150464--150498 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
150454 ATTGACACAG
150464 AAAAAG-
1 AAAAAGA
150470 AAAAAG-
1 AAAAAGA
150476 AAAAAGA
1 AAAAAGA
150483 AAAAAGA
1 AAAAAGA
150490 AAAAAGA
1 AAAAAGA
150497 AA
1 AA
150499 GAGCCATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 12 0.43
7 16 0.57
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:161408 original size:10 final size:10
Alignment explanation
Indices: 161388--161418 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
161378 CTCTAACATG
161388 TTCCA-TAAC
1 TTCCATTAAC
161397 TTCCATTAAC
1 TTCCATTAAC
161407 TTCCATTAAC
1 TTCCATTAAC
161417 TT
1 TT
161419 AACTAGGTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.24
10 16 0.76
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (10 bp):
TTCCATTAAC
Found at i:164289 original size:16 final size:16
Alignment explanation
Indices: 164268--164302 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
164258 GTTTGGATGG
164268 TTTGAAGGATTGGGGT
1 TTTGAAGGATTGGGGT
164284 TTTGAAGGATTGGGGT
1 TTTGAAGGATTGGGGT
164300 TTT
1 TTT
164303 CAACAATGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.43
Consensus pattern (16 bp):
TTTGAAGGATTGGGGT
Found at i:168716 original size:3 final size:3
Alignment explanation
Indices: 168708--168732 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
168698 AAATCATAAC
168708 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
168733 CAAATTCCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:178557 original size:11 final size:12
Alignment explanation
Indices: 178527--178551 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
178517 TTTATTCTTA
178527 ATAATTATTTTT
1 ATAATTATTTTT
178539 ATAATTATTTTT
1 ATAATTATTTTT
178551 A
1 A
178552 GATTATGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATAATTATTTTT
Found at i:180124 original size:22 final size:22
Alignment explanation
Indices: 180097--180145 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
180087 GAATTTCGAG
* *
180097 AACCTTTTTAT-AAATTTCTTTT
1 AACCTTATTATGAAATTT-TGTT
180119 AACCTTATTATGAAATTTTGTT
1 AACCTTATTATGAAATTTTGTT
180141 AACCT
1 AACCT
180146 CCCTAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.31, C:0.14, G:0.04, T:0.51
Consensus pattern (22 bp):
AACCTTATTATGAAATTTTGTT
Found at i:180228 original size:22 final size:22
Alignment explanation
Indices: 180170--180231 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 22
180160 GAAGACTTCA
*
180170 ATATGAAATTTTGATAACCAAC
1 ATATGAAATATTGATAACCAAC
* * **
180192 ACTATGAGATGTTGATAACCTCC
1 A-TATGAAATATTGATAACCAAC
*
180215 ATATGATATATTGATAA
1 ATATGAAATATTGATAA
180232 TCACGTTATG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 15 0.45
23 18 0.55
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (22 bp):
ATATGAAATATTGATAACCAAC
Found at i:180298 original size:22 final size:22
Alignment explanation
Indices: 180171--180341 Score: 102
Period size: 22 Copynumber: 7.7 Consensus size: 22
180161 AAGACTTCAA
*
180171 TATGAAATTTTGATAACCAACAC
1 TATGAAATTTTGATAATC-ACAC
* *
180194 TATGAGATGTTGATAACCTC-CA-
1 TATGAAATTTTGATAA--TCACAC
* * **
180216 TATGATATATTGATAATCACGT
1 TATGAAATTTTGATAATCACAC
* * *
180238 TATGAAAATTTAAAAACCTC-CA-
1 TATGAAATTTTGATAA--TCACAC
180260 TATG-AATTGTT-AGTAATCACAC
1 TATGAAATT-TTGA-TAATCACAC
*
180282 TCTGAAATTTTGATAATCACAC
1 TATGAAATTTTGATAATCACAC
* * * *
180304 TATGAAATTGTGATAACCTCGC
1 TATGAAATTTTGATAATCACAC
180326 TATGAAATTTTGATAA
1 TATGAAATTTTGATAA
180342 ATCTTCCTAT
Statistics
Matches: 115, Mismatches: 21, Indels: 25
0.71 0.13 0.16
Matches are distributed among these distances:
20 4 0.03
21 7 0.06
22 79 0.69
23 22 0.19
24 2 0.02
25 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.35
Consensus pattern (22 bp):
TATGAAATTTTGATAATCACAC
Found at i:180356 original size:23 final size:22
Alignment explanation
Indices: 180286--180386 Score: 89
Period size: 23 Copynumber: 4.5 Consensus size: 22
180276 TCACACTCTG
* * *
180286 AAATTTTGATAATCAC-ACTATG
1 AAATTTTGATAAAC-CTCCTATA
* *
180308 AAATTGTGAT-AACCTCGCTATG
1 AAATTTTGATAAACCTC-CTATA
*
180330 AAATTTTGATAAATCTTCCTATA
1 AAATTTTGATAAA-CCTCCTATA
*
180353 AAATCTTGATAAACCTCCTTATA
1 AAATTTTGATAAACCTCC-TATA
180376 AAATTTTGATA
1 AAATTTTGATA
180387 TTTTTCTTAT
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
20 1 0.02
21 2 0.03
22 27 0.42
23 32 0.49
24 3 0.05
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.38
Consensus pattern (22 bp):
AAATTTTGATAAACCTCCTATA
Found at i:180403 original size:45 final size:46
Alignment explanation
Indices: 180286--180409 Score: 125
Period size: 45 Copynumber: 2.8 Consensus size: 46
180276 TCACACTCTG
* *
180286 AAATTTTGAT-AATC-ACACTATGAAAT-TGTGAT-AACCTCGCTATG
1 AAATTTTGATAAATCTTC-CTATGAAATCT-TGATAAACCTCGCTATA
*
180330 AAATTTTGATAAATCTTCCTATAAAATCTTGATAAACCTC-CTTATA
1 AAATTTTGATAAATCTTCCTATGAAATCTTGATAAACCTCGC-TATA
* * *
180376 AAATTTTGAT-ATTTTTCTTATGAAATCTTGATAA
1 AAATTTTGATAAATCTTCCTATGAAATCTTGATAA
180410 TTACAAATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
44 10 0.15
45 37 0.54
46 21 0.31
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (46 bp):
AAATTTTGATAAATCTTCCTATGAAATCTTGATAAACCTCGCTATA
Found at i:180443 original size:22 final size:22
Alignment explanation
Indices: 180414--180520 Score: 108
Period size: 22 Copynumber: 4.9 Consensus size: 22
180404 TGATAATTAC
180414 AAATTTTGATAACCTCCCTATG
1 AAATTTTGATAACCTCCCTATG
** **
180436 ATTTTTTGATAACCTCATTATG
1 AAATTTTGATAACCTCCCTATG
* *
180458 AAATTTTGTTAATCTCCCTATG
1 AAATTTTGATAACCTCCCTATG
* * *
180480 AAATTTTGATCCACAT-ACTATG
1 AAATTTTGAT-AACCTCCCTATG
*
180502 AAATTTTGATAATCTCCCT
1 AAATTTTGATAACCTCCCT
180521 TCGTGTGGAA
Statistics
Matches: 64, Mismatches: 19, Indels: 4
0.74 0.22 0.05
Matches are distributed among these distances:
21 2 0.03
22 60 0.94
23 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (22 bp):
AAATTTTGATAACCTCCCTATG
Found at i:180477 original size:44 final size:43
Alignment explanation
Indices: 180414--180520 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 43
180404 TGATAATTAC
* ** *
180414 AAATTTTGATAACCTCCCTATGATTTTTTGATAACCTCAT-TATG
1 AAATTTTGATAATCTCCCTATGAAATTTTGAT--CCACATATATG
*
180458 AAATTTTGTTAATCTCCCTATGAAATTTTGATCCACATACTATG
1 AAATTTTGATAATCTCCCTATGAAATTTTGATCCACATA-TATG
180502 AAATTTTGATAATCTCCCT
1 AAATTTTGATAATCTCCCT
180521 TCGTGTGGAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 5 0.09
44 50 0.91
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (43 bp):
AAATTTTGATAATCTCCCTATGAAATTTTGATCCACATATATG
Found at i:180977 original size:16 final size:15
Alignment explanation
Indices: 180906--180973 Score: 55
Period size: 16 Copynumber: 4.3 Consensus size: 15
180896 GGGTTGATCG
* *
180906 GGTTCGGGTAATTTT
1 GGTTCGGGTCATTTC
*
180921 GGGTCTGGGTCATTTC
1 GGTTC-GGGTCATTTC
* **
180937 AGGTTCGGATCATTGA
1 -GGTTCGGGTCATTTC
180953 GGATTCGGGTCATTTC
1 GG-TTCGGGTCATTTC
180969 GGTTC
1 GGTTC
180974 CGGGAGCAGA
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
15 9 0.22
16 27 0.68
17 4 0.10
ACGTcount: A:0.13, C:0.15, G:0.34, T:0.38
Consensus pattern (15 bp):
GGTTCGGGTCATTTC
Found at i:182096 original size:6 final size:6
Alignment explanation
Indices: 182085--182123 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
182075 ATCAATGCAT
182085 CACAAA CACAAA CACAAA CACAAA CACAAA CACAAA CAC
1 CACAAA CACAAA CACAAA CACAAA CACAAA CACAAA CAC
182124 CCTTGTGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.64, C:0.36, G:0.00, T:0.00
Consensus pattern (6 bp):
CACAAA
Found at i:194669 original size:5 final size:6
Alignment explanation
Indices: 194652--194679 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
194642 ATTCAACAAC
194652 AGAAAA AGAAAA AGAAAA AGAAAA AGAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAA
194680 GGAAGCTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:194926 original size:3 final size:3
Alignment explanation
Indices: 194904--194942 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
194894 AAAGGTGAAT
* * *
194904 AAG AAG TAG ACG AGG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
194943 GGATCGCGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.59, C:0.03, G:0.36, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:195736 original size:2 final size:2
Alignment explanation
Indices: 195731--195758 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
195721 CAATTGTGTG
195731 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
195759 ATTATCATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:196649 original size:36 final size:36
Alignment explanation
Indices: 196609--196823 Score: 283
Period size: 36 Copynumber: 6.0 Consensus size: 36
196599 TTGAAGGCAC
196609 AGCCCCAGAAGGCCGGCCAGGCCCCATACCATTGCT
1 AGCCCCAGAAGGCCGGCCAGGCCCCATACCATTGCT
*
196645 AGCCCCAGAAGGCCGGCCAGGACCCATACCATTGCT
1 AGCCCCAGAAGGCCGGCCAGGCCCCATACCATTGCT
* * *
196681 AGCCCCAGTAGGCCGGCCAGGACCCATACCACTGCT
1 AGCCCCAGAAGGCCGGCCAGGCCCCATACCATTGCT
*
196717 AGCCCCAGAAGGCCGGCCAGGCCCCATACCGTTGCT
1 AGCCCCAGAAGGCCGGCCAGGCCCCATACCATTGCT
* ** **
196753 AGCTCCA-ACAGGCCGGGGAGGCCTGATACCATTGCT
1 AGCCCCAGA-AGGCCGGCCAGGCCCCATACCATTGCT
*
196789 AGCGCCA-ACAGGCCGGCCA-GCCCCACTACCATTGC
1 AGCCCCAGA-AGGCCGGCCAGGCCCCA-TACCATTGC
196824 CAGGCCGGCC
Statistics
Matches: 159, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
35 5 0.03
36 154 0.97
ACGTcount: A:0.22, C:0.40, G:0.26, T:0.12
Consensus pattern (36 bp):
AGCCCCAGAAGGCCGGCCAGGCCCCATACCATTGCT
Found at i:198078 original size:21 final size:21
Alignment explanation
Indices: 198054--198103 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
198044 TGTCTAGCTT
198054 CCTCTTCTTCATACTCCTCAC
1 CCTCTTCTTCATACTCCTCAC
* *
198075 CCTCTTCTTCATATTCCTCCC
1 CCTCTTCTTCATACTCCTCAC
198096 CCTCTTCT
1 CCTCTTCT
198104 CCCTCAACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.10, C:0.48, G:0.00, T:0.42
Consensus pattern (21 bp):
CCTCTTCTTCATACTCCTCAC
Found at i:208421 original size:16 final size:16
Alignment explanation
Indices: 208400--208430 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
208390 ATATTGATAC
208400 AATAATGAGTCAAAAA
1 AATAATGAGTCAAAAA
*
208416 AATAATGAGTTAAAA
1 AATAATGAGTCAAAA
208431 CAAACACGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.03, G:0.13, T:0.23
Consensus pattern (16 bp):
AATAATGAGTCAAAAA
Found at i:210780 original size:25 final size:25
Alignment explanation
Indices: 210731--210779 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
210721 CTTAAACAAT
*
210731 TTTTCTTACTTATTGCCAAAAAAAA
1 TTTTCTTACTTATGGCCAAAAAAAA
210756 TTTTCTTACTT-TGGCCAAAAAAAA
1 TTTTCTTACTTATGGCCAAAAAAAA
210780 AAGAAAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (25 bp):
TTTTCTTACTTATGGCCAAAAAAAA
Found at i:211296 original size:78 final size:78
Alignment explanation
Indices: 211214--211460 Score: 379
Period size: 78 Copynumber: 3.2 Consensus size: 78
211204 TTATTTAGGT
* * * *
211214 TTTTA-TAGTTTTATTCAACTAAAAACTCTATTCTTATTTAATTAAATATAATATCTTTATAACT
1 TTTTACTA-TTTTATTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACT
*
211278 ATTTTATTTTACCA
65 ATTATATTTTACCA
*
211292 TTTTACTATTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTA
1 TTTTACTATTTTATTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTA
*
211357 TTATACTTTACCA
66 TTATATTTTACCA
* *
211370 TTTTACTATTTTATTCAACTAAAAACTCTATTTTTATATAATTAAATCTATTAACCTTATAACTA
1 TTTTACTATTTTATTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTA
**
211435 TTATATTTTAATA
66 TTATATTTTACCA
211448 TTTTACTATTTTA
1 TTTTACTATTTTA
211461 ATTAAAAAAC
Statistics
Matches: 155, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
78 153 0.99
79 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.50
Consensus pattern (78 bp):
TTTTACTATTTTATTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTA
TTATATTTTACCA
Found at i:211723 original size:19 final size:19
Alignment explanation
Indices: 211699--211737 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
211689 TAGTCTAATC
211699 ATTAATTATTCATATTTTT
1 ATTAATTATTCATATTTTT
211718 ATTAATTATTCATATTTTT
1 ATTAATTATTCATATTTTT
211737 A
1 A
211738 AAACTAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTAATTATTCATATTTTT
Found at i:212654 original size:40 final size:40
Alignment explanation
Indices: 212599--212676 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
212589 ATTAAATTTA
*
212599 ATTCGAAAGATTAATTTAATACATTAAGAAATTTTCTGTT
1 ATTCGAAAAATTAATTTAATACATTAAGAAATTTTCTGTT
*
212639 ATTCGAAAAATTAATTTAATACATTAATAAATTTTCTG
1 ATTCGAAAAATTAATTTAATACATTAAGAAATTTTCTG
212677 CTACATTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (40 bp):
ATTCGAAAAATTAATTTAATACATTAAGAAATTTTCTGTT
Done.