Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014513.1 Corchorus capsularis cultivar CVL-1 contig14534, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23569
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34


Found at i:297 original size:159 final size:158

Alignment explanation


    Indices: 1--348  Score: 480
    Period size: 159  Copynumber: 2.2  Consensus size: 158

                                    *    *         *          *              
          1 TCCGCAGATAAAATTTCGAAGAAATTGATGAGCTCTGCTTCAAAAACCCCGGAACCCACCCCTCT
          1 TCCGCAGATAAAATTTC-AAGAAACTGATAAGCTCTGCTCCAAAAACCCCCGAACCCACCCCTCT

                  *    *                                          *  *    *  
         66 CCGCAGGTCCTTAAGGCTTCTCAATCGAGCAACTCCATCAAAACCACAAGATTTTAGTGCCCGAA
         65 CCGCAGATCCTCAAGGCTTCTCAATCGAGCAACTCCATCAAAACCACAAGATTTGAGAGCCCAAA

                                         
        131 AGCCAGAATCCAAGAAAACCCCCGCTCAC
        130 AGCCAGAATCCAAGAAAACCCCCGCTCAC

                               *                                  *    *     
        160 TCCGCAGATAAAATTTGCAGGAAACTGATAAGCTCTGCTCCAAAAACCCCCGAATCCACTCCTCT
          1 TCCGCAGATAAAATTT-CAAGAAACTGATAAGCTCTGCTCCAAAAACCCCCGAACCCACCCCTCT

                *                     *         *  *   *                     
        225 CCGCCGATCCTCAAGGCTTCTCAATCTAGCAACTCCCTCGAAATCACAAGATTTGAGAGCCCAAA
         65 CCGCAGATCCTCAAGGCTTCTCAATCGAGCAACTCCATCAAAACCACAAGATTTGAGAGCCCAAA

              *                        * 
        290 AGTCAGAATCCAAGAAAACCCCCGCTCGC
        130 AGCCAGAATCCAAGAAAACCCCCGCTCAC

            *  *                          
        319 CCCACAGATAAAATTTCCAAGAAACTGATA
          1 TCCGCAGATAAAATTT-CAAGAAACTGATA

        349 CAACCAAGCA


Statistics
Matches: 165,  Mismatches: 23, Indels: 2
        0.87            0.12        0.01

Matches are distributed among these distances:
 159  164  0.99
 160    1  0.01

ACGTcount: A:0.34, C:0.32, G:0.15, T:0.19


Consensus pattern (158 bp):   
TCCGCAGATAAAATTTCAAGAAACTGATAAGCTCTGCTCCAAAAACCCCCGAACCCACCCCTCTC
CGCAGATCCTCAAGGCTTCTCAATCGAGCAACTCCATCAAAACCACAAGATTTGAGAGCCCAAAA
GCCAGAATCCAAGAAAACCCCCGCTCAC
Done.