Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014514.1 Corchorus capsularis cultivar CVL-1 contig14535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10261
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32


Found at i:1742 original size:29 final size:29

Alignment explanation


    Indices: 1710--1768  Score: 75
    Period size: 31  Copynumber: 2.0  Consensus size: 29

       1700 AAGGACTAAA

                         *                
       1710 TTGCATATTTT-TTCACTTGAGGGACCAAC
          1 TTGC-TATTTTCTCCACTTGAGGGACCAAC

                                          
       1739 TTGCTATTTTCGCTCCACTTGAGGGACCAA
          1 TTGCTATTTT--CTCCACTTGAGGGACCAA

       1769 GTATGTACTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  28    6  0.23
  29    4  0.15
  31   16  0.62

ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36


Consensus pattern (29 bp):   
TTGCTATTTTCTCCACTTGAGGGACCAAC

Found at i:8322 original size:2 final size:2

Alignment explanation


    Indices: 8317--8350  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       8307 ACACACAGAG

                                                              
       8317 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       8351 TAACTTACTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.