Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014515.1 Corchorus capsularis cultivar CVL-1 contig14536, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94352

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
645--679
2
17.5
2
100
0
70
51
0
0
48
1.00
3428--3485
24
2.4
24
79
0
71
32
58
5
3
1.37
3467--3663
36
5.5
36
68
18
158
30
47
8
13
1.72
3426--3716
72
4.0
72
94
1
483
30
48
8
13
1.71
3503--3699
36
5.5
36
69
18
158
31
50
7
10
1.65
30617--30655
19
2.1
19
100
0
78
38
5
20
35
1.75
32305--32356
6
8.8
6
97
2
97
17
34
17
30
1.93
49725--49750
2
13.0
2
100
0
52
50
0
0
50
1.00
53553--53586
2
17.0
2
100
0
68
50
0
0
50
1.00
54761--54813
3
17.7
3
100
0
106
0
32
0
67
0.91
55575--55605
13
2.4
13
88
0
53
45
9
0
45
1.36
60545--60581
2
18.5
2
100
0
74
51
0
0
48
1.00
74753--74828
31
2.4
31
78
8
82
26
23
13
36
1.91
82603--82741
34
4.2
34
90
2
212
27
21
28
22
1.99

Tables:   1

The End!