Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001452.1 Corchorus capsularis cultivar CVL-1 contig01452, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6407
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36


Found at i:5329 original size:17 final size:15

Alignment explanation


    Indices: 5295--5333  Score: 51
    Period size: 17  Copynumber: 2.5  Consensus size: 15

       5285 AAGTCTTCTT

                         * 
       5295 TTTTTTCTTTTTTTC
          1 TTTTTTCTTTTTTCC

                             
       5310 TTTTTTCATTTTCTTCC
          1 TTTTTTC-TTTT-TTCC

                   
       5327 TTTTTTC
          1 TTTTTTC

       5334 CCACTCTTAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  15    7  0.33
  16    4  0.19
  17   10  0.48

ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79


Consensus pattern (15 bp):   
TTTTTTCTTTTTTCC
Done.