Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014523.1 Corchorus capsularis cultivar CVL-1 contig14544, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91256

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9088--9117
14
2.1
14
93
0
51
23
16
6
53
1.66
11525--11592
28
2.4
28
97
0
127
38
29
19
13
1.89
27230--27276
24
2.0
24
83
4
60
38
12
14
34
1.85
31947--31972
11
2.4
11
100
0
52
34
19
7
38
1.80
33207--33247
19
2.2
19
95
0
73
24
9
12
53
1.68
39460--39501
19
2.2
20
87
8
61
16
9
7
66
1.42
47055--47088
17
2.0
17
94
0
59
5
5
20
67
1.33
49646--49715
35
2.1
35
91
5
117
25
17
7
50
1.71
49721--49768
21
2.3
21
92
0
78
22
20
10
45
1.81
59367--59391
1
25.0
1
100
0
50
100
0
0
0
0.00
59478--59502
5
5.0
5
100
0
50
40
40
20
0
1.52
64984--65506
173
3.1
170
88
4
767
39
13
11
35
1.81
65510--65553
21
2.1
21
91
0
70
20
36
9
34
1.84
65624--65682
25
2.4
25
91
5
95
35
23
0
40
1.55
65692--65759
26
2.6
26
97
0
127
54
11
0
33
1.37
65692--65763
11
5.4
15
69
25
63
55
12
0
31
1.37
66038--66082
21
2.1
21
91
0
72
33
8
40
17
1.81
66653--67038
162
2.5
155
85
7
582
40
10
12
37
1.77
77473--77559
43
2.0
43
97
0
165
35
28
9
26
1.87
87160--87230
25
2.6
27
89
8
101
56
9
5
28
1.54
89526--89554
3
9.7
3
100
0
58
0
31
0
68
0.89

Tables:   1

The End!