Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014525.1 Corchorus capsularis cultivar CVL-1 contig14546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94631

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
979--1021
5
9.4
5
87
12
58
0
0
13
86
0.58
979--1021
13
3.1
14
87
12
63
0
0
13
86
0.58
982--1021
18
2.4
16
84
12
53
0
0
12
87
0.54
4330--4360
5
6.4
5
92
7
55
80
0
19
0
0.71
4330--4359
14
2.1
14
100
0
60
80
0
20
0
0.72
8498--8553
29
2.0
28
82
3
67
46
3
3
46
1.37
10585--10617
13
2.3
15
90
10
52
18
9
6
66
1.40
13302--13364
31
2.0
31
96
0
117
25
15
26
31
1.96
14417--19804
322
16.8
319
78
6
5543
32
16
17
34
1.92
14417--19804
643
8.4
644
90
2
8292
32
16
17
34
1.92
19687--19936
132
1.9
132
98
1
484
26
20
19
34
1.96
19366--20234
455
1.9
454
81
6
1064
30
17
17
34
1.93
19820--22395
321
8.0
319
80
6
2712
32
15
17
34
1.91
19820--22711
321
8.9
318
78
8
2659
32
15
16
34
1.91
24436--24486
24
2.1
24
88
0
75
47
17
29
5
1.71
24461--24576
45
2.6
45
91
0
187
39
18
37
4
1.70
24496--24569
25
3.2
25
64
25
70
36
22
37
2
1.69
24503--24579
20
3.7
20
70
23
68
40
19
37
2
1.66
24537--24731
52
3.8
52
93
1
320
29
28
40
2
1.70
24720--24781
24
2.6
24
97
0
115
45
25
25
3
1.69
25607--25731
45
2.8
45
92
0
196
31
20
26
22
1.98
27542--27582
2
20.5
2
100
0
82
51
0
48
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43240--43448
107
2.0
107
88
5
316
39
11
9
40
1.72
44377--44414
19
2.0
20
85
15
53
28
5
2
63
1.30
44580--44719
22
6.3
22
74
12
106
31
8
20
40
1.82
44755--45130
22
16.9
22
70
11
185
39
9
16
34
1.82
45209--45769
22
25.6
22
71
11
206
39
9
14
35
1.79
47290--47356
22
3.0
22
73
18
68
53
7
0
38
1.29
47300--47332
14
2.3
15
89
5
50
51
6
0
42
1.26
47346--47370
13
1.9
13
100
0
50
60
0
0
40
0.97
48374--48429
27
2.1
27
96
0
103
26
30
3
39
1.73
49240--49293
28
1.9
27
85
7
72
7
11
3
77
1.09
71875--71919
3
15.0
3
90
9
74
33
0
33
33
1.58
71905--72126
114
1.9
114
96
0
408
44
4
31
19
1.71
79562--79616
11
5.3
11
77
16
55
0
27
3
69
1.05
94452--94500
2
25.0
2
80
12
57
44
2
2
51
1.24
94422--94486
28
2.4
27
84
2
76
46
4
1
47
1.32
94572--94616
18
2.4
18
81
7
54
55
8
0
35
1.31

Tables:   1

The End!