Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014530.1 Corchorus capsularis cultivar CVL-1 contig14551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175618

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1328--1395
32
2.1
32
97
0
127
14
36
33
14
1.87
13855--13884
15
2.0
15
100
0
60
40
26
13
20
1.89
16575--16607
2
17.0
2
93
6
59
48
0
0
51
1.00
19691--19719
2
14.5
2
100
0
58
48
0
0
51
1.00
23594--23641
18
2.7
17
81
9
51
29
64
0
6
1.18
23592--23641
12
4.2
12
78
0
55
30
64
0
6
1.18
25506--25583
40
2.0
39
87
7
113
43
14
12
29
1.82
26864--26970
53
2.0
53
96
0
196
40
5
11
42
1.64
27015--27049
16
2.2
16
89
0
52
57
5
25
11
1.56
38241--38288
22
2.3
20
86
10
62
39
25
16
18
1.91
38208--38310
53
1.9
53
86
0
143
37
25
20
16
1.93
38260--38368
31
3.5
31
80
3
112
35
24
21
18
1.95
39721--39770
20
2.5
20
96
0
91
50
26
12
12
1.74
43232--43288
28
2.0
28
93
6
98
26
21
3
49
1.65
46233--46264
15
2.1
16
88
11
50
53
9
0
37
1.34
61631--61767
12
11.8
12
67
16
83
34
1
24
39
1.65
61678--61722
23
2.0
23
95
0
81
40
0
22
37
1.54
61629--61770
69
2.0
70
95
1
259
36
1
23
38
1.64
61630--61761
34
3.8
34
83
8
169
34
1
25
39
1.65
62668--62729
30
2.0
30
81
9
72
32
16
4
46
1.68
64721--64750
14
2.1
14
100
0
60
33
36
0
30
1.58
87923--87947
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96155--96181
7
3.9
7
100
0
54
88
11
0
0
0.50
98827--98869
20
2.1
21
86
4
61
39
20
18
20
1.93
99004--99033
15
2.0
15
100
0
60
40
6
0
53
1.27
104724--104769
24
1.9
24
90
0
74
6
32
32
28
1.83
104750--104812
33
1.9
33
93
6
110
15
23
25
34
1.95
105125--105172
18
2.7
18
83
0
69
35
10
41
12
1.77
105166--105199
3
11.3
3
93
0
59
67
0
32
0
0.91
109135--109194
21
2.9
21
82
5
68
16
6
56
20
1.62
109823--109858
2
18.0
2
100
0
72
50
0
0
50
1.00
118944--118974
2
15.5
2
100
0
62
48
0
0
51
1.00
119501--119531
11
2.7
11
95
5
53
67
0
0
32
0.91
119525--119557
10
3.3
10
91
0
57
87
0
12
0
0.53
119525--119557
14
2.4
14
85
14
50
87
0
12
0
0.53
119674--119741
26
2.6
26
84
9
93
35
1
8
54
1.41
119698--119741
15
3.2
15
72
24
51
36
0
9
54
1.32
119750--119809
25
2.5
25
89
5
88
43
0
21
35
1.53
119880--119923
21
2.1
21
86
0
61
38
9
38
13
1.77
133390--133485
39
2.4
40
96
3
176
29
5
21
43
1.74
148582--148634
2
28.0
2
81
11
58
49
3
1
45
1.31
148586--148648
28
2.2
28
83
8
74
49
11
1
38
1.48
157336--157405
29
2.4
29
85
2
86
38
28
12
20
1.89
167223--167248
5
5.2
5
100
0
52
38
0
0
61
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170088--170113
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!