genome.fa.s14531.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014531.1 Corchorus capsularis cultivar CVL-1 contig14552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88550

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40--79	16	2.5	15	84	11	53	82	2	15	0	0.77
3089--3122	17	2.0	17	94	0	59	35	8	11	44	1.72
18831--18908	29	2.7	29	81	2	93	16	24	16	42	1.88
19074--19153	29	2.7	30	75	13	92	48	16	18	16	1.81
20928--20977	24	2.0	24	85	11	66	52	2	8	38	1.43
21826--21871	20	2.2	20	85	11	58	28	6	13	52	1.65
23318--23420	51	2.0	52	96	1	190	24	11	22	41	1.87
24160--24202	20	2.1	21	86	4	61	39	20	18	20	1.93
24963--24987	8	3.1	8	100	0	50	12	0	0	88	0.53
24999--25247	107	2.4	104	85	4	349	40	8	8	41	1.66
27490--27584	31	3.1	31	82	0	109	21	22	23	33	1.97
27541--27643	53	1.9	53	88	0	152	17	19	25	37	1.93
33288--33313	13	2.0	13	100	0	52	30	15	7	46	1.74
46398--46463	32	2.1	32	86	8	91	57	12	4	25	1.53
58095--58190	33	2.9	33	84	0	129	36	12	31	19	1.89
64499--64555	17	3.4	17	81	11	55	24	19	19	36	1.94
67414--67443	15	2.0	15	100	0	60	20	33	13	33	1.91
70598--70648	24	2.1	24	82	7	59	41	13	15	29	1.86
70891--71239	86	4.0	86	94	4	635	37	16	8	37	1.79
70891--71239	178	2.0	172	96	3	635	37	16	8	37	1.79
71806--72371	22	25.9	22	67	12	118	37	14	8	39	1.77
72071--72174	23	4.6	22	83	3	104	42	13	6	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72071--72196	68	1.9	67	83	5	164	40	13	7	38	1.72
72357--72423	19	3.5	19	83	2	80	25	19	11	43	1.85
72529--72774	22	11.3	22	70	10	148	32	14	10	42	1.79
72504--72674	44	3.9	44	77	6	159	33	12	10	42	1.78
72504--72670	88	1.9	88	85	4	230	32	13	10	43	1.78
72529--72834	22	13.8	22	68	18	113	33	15	9	41	1.80
72961--73041	22	3.6	22	79	9	83	39	16	8	35	1.79
73008--73070	22	2.9	22	90	0	90	34	14	14	36	1.86
72954--73113	44	3.6	44	76	9	128	37	17	10	34	1.84
72990--73115	22	5.7	21	75	16	78	35	15	11	36	1.85
73396--73460	30	2.1	31	91	2	105	46	3	18	32	1.65
73536--73632	31	3.1	31	91	2	142	28	19	5	46	1.71
73892--74041	44	3.4	44	86	5	153	35	12	17	35	1.87
73941--74041	44	2.3	44	96	0	184	35	13	15	34	1.88
73892--74088	22	8.9	22	82	9	129	34	10	18	37	1.85
74135--74549	22	18.7	22	68	14	88	40	9	15	35	1.80
74331--74544	44	4.8	44	76	9	170	43	8	12	35	1.73
74337--74522	66	2.8	66	78	8	162	43	8	12	35	1.73
74354--74547	88	2.2	87	84	6	241	43	8	12	35	1.73
74628--74694	19	3.5	19	85	6	91	44	11	19	23	1.84
76834--76862	5	5.8	5	100	0	58	82	0	17	0	0.66
84096--84121	13	2.0	13	100	0	52	15	7	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83455--88550	333	15.3	329	80	7	4540	36	15	14	32	1.88
83455--88550	665	7.7	651	80	8	4453	36	15	14	32	1.88

Tables:   1

The End!