genome.fa.s14532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014532.1 Corchorus capsularis cultivar CVL-1 contig14553, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204976

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2585	332	7.8	332	85	4	3276	36	16	13	33	1.88
31--2591	676	3.9	662	84	5	3282	36	16	13	33	1.88
2369--2845	256	1.9	253	81	5	586	36	15	13	34	1.87
3153--4648	26	56.0	26	81	10	1516	33	20	15	30	1.94
3641--3691	16	3.2	16	67	10	50	33	19	19	27	1.96
3792--3883	45	2.0	45	89	4	141	32	22	11	32	1.91
3885--4076	16	13.1	16	59	25	59	35	18	15	31	1.91
4705--4817	37	3.1	37	93	3	185	38	20	21	19	1.93
4705--4835	37	3.7	34	88	8	142	39	21	19	19	1.92
9894--9923	3	10.3	3	92	7	53	66	0	0	33	0.92
10648--10705	20	3.0	20	76	19	68	41	18	18	20	1.91
27094--27118	7	3.6	7	100	0	50	76	12	0	12	1.04
30708--30742	7	5.0	7	92	0	52	5	42	0	51	1.25
30705--30742	14	2.7	14	83	0	58	7	42	0	50	1.31
65552--65687	67	2.0	66	92	1	227	39	15	9	35	1.80
66781--66845	33	2.0	33	100	0	130	44	21	6	27	1.76
78941--78986	18	2.9	15	79	17	56	13	56	17	13	1.67
78950--78985	9	4.0	9	85	0	54	13	55	16	13	1.69
78951--78985	18	1.9	18	94	0	61	14	57	14	14	1.66
79964--79992	15	1.9	15	100	0	58	41	17	13	27	1.87
79548--80440	459	1.9	459	100	0	1786	37	18	12	32	1.88
80646--80681	17	2.1	18	89	5	56	47	5	13	33	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86823--86852	3	10.0	3	100	0	60	33	0	33	33	1.58
96229--96263	18	2.0	17	88	5	52	8	11	31	48	1.69
96906--96960	28	1.9	29	88	3	85	45	14	3	36	1.63
100073--100149	36	2.1	36	92	4	129	25	12	15	45	1.82
108275--108416	71	2.0	71	94	0	248	35	11	3	48	1.57
108393--108655	107	2.5	106	86	3	334	42	8	9	39	1.69
109564--109644	40	2.0	40	82	0	99	20	30	27	20	1.98
111035--111103	29	2.3	29	85	7	86	40	28	13	17	1.87
112768--112795	6	4.7	6	100	0	56	0	28	0	71	0.86
117382--117408	7	3.9	7	100	0	54	14	0	40	44	1.46
127769--127802	16	2.1	16	94	0	59	11	26	14	47	1.79
128603--128628	6	4.3	6	100	0	52	84	15	0	0	0.62
131396--131435	2	20.0	2	94	0	71	50	0	2	47	1.14
139250--139278	2	14.5	2	100	0	58	48	0	0	51	1.00
154763--154814	27	1.9	27	92	0	86	28	13	5	51	1.64
156670--156764	31	3.1	31	93	1	165	31	4	28	35	1.76
161507--161544	5	7.8	5	85	5	51	81	0	18	0	0.69
168961--169006	24	1.9	24	90	0	74	41	2	8	47	1.46
178319--178344	13	2.0	13	100	0	52	38	15	7	38	1.76
187490--187903	204	2.1	203	86	3	568	29	16	18	36	1.92
189607--189657	6	8.8	6	87	8	79	15	0	0	84	0.63
189613--189659	15	3.3	15	77	22	64	14	0	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189606--189659	22	2.6	21	88	8	83	14	0	0	85	0.61
189849--189877	2	14.5	2	100	0	58	51	0	0	48	1.00
191607--191710	54	2.0	51	90	5	163	45	20	8	25	1.79
194493--194598	31	3.5	31	87	3	144	32	25	24	17	1.97
197363--197395	1	33.0	1	93	0	57	0	3	0	96	0.20
199096--199136	18	2.2	19	86	4	57	41	9	4	43	1.59
200959--201057	33	3.1	33	88	4	141	43	16	21	19	1.88
203653--204219	289	2.0	291	82	4	707	32	16	16	34	1.91
203944--204959	332	3.1	330	78	6	1145	33	14	15	36	1.88

Tables:   1

The End!