Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014535.1 Corchorus capsularis cultivar CVL-1 contig14556, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48057

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110--211
31
3.4
31
68
15
95
25
18
17
38
1.93
110--273
60
2.7
60
88
1
240
26
18
17
37
1.93
5040--5140
37
2.7
37
98
0
193
18
27
29
23
1.98
5121--5163
21
2.0
21
95
0
77
13
25
39
20
1.90
9253--9291
2
19.5
2
100
0
78
48
0
0
51
1.00
13205--13236
13
2.5
13
94
0
55
59
6
21
12
1.55
35129--35164
1
36.0
1
100
0
72
100
0
0
0
0.00
36885--36909
2
12.5
2
100
0
50
48
0
0
52
1.00
40392--40459
36
2.0
35
85
8
95
38
8
27
25
1.85
46946--47071
64
2.0
60
90
6
198
31
11
20
36
1.88
47518--47552
2
17.5
2
100
0
70
51
0
0
48
1.00

Tables:   1

The End!