Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014539.1 Corchorus capsularis cultivar CVL-1 contig14560, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39440

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3030--3065
18
2.0
18
94
0
63
52
0
30
16
1.44
10155--10189
14
2.4
14
95
4
61
0
65
0
34
0.93
13366--13713
174
2.0
174
98
0
678
54
12
7
25
1.63
13395--13667
87
3.1
87
66
12
252
56
13
6
23
1.60
15709--15744
17
2.1
17
89
0
54
22
30
19
27
1.98
19128--19199
29
2.4
31
86
4
94
30
18
11
40
1.85
19151--19207
29
2.0
28
86
3
78
28
17
14
40
1.88
19784--20135
180
2.0
177
90
1
551
36
9
2
51
1.50
20190--20283
31
3.1
30
89
6
136
35
12
9
42
1.76
20363--20442
29
2.7
29
84
3
88
41
12
16
30
1.85
28790--28846
27
2.1
27
100
0
114
14
22
14
49
1.79

Tables:   1

The End!