Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014541.1 Corchorus capsularis cultivar CVL-1 contig14562, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42343

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--128
39
3.1
40
81
4
162
30
37
18
13
1.89
1992--2312
160
2.0
159
99
0
633
29
18
18
34
1.94
6398--6443
23
2.0
23
100
0
92
26
34
13
26
1.92
7624--7661
1
38.0
1
100
0
76
100
0
0
0
0.00
10245--10349
52
2.0
52
90
3
167
48
16
9
25
1.76
18395--18428
10
3.5
10
92
8
61
0
41
8
50
1.34
18395--18424
9
3.2
9
95
4
51
0
40
10
50
1.36
20303--20380
31
2.5
32
76
4
95
32
32
23
12
1.92
22616--22653
11
3.5
11
85
10
51
57
2
0
39
1.12
22965--23046
41
2.0
40
88
6
121
46
6
3
43
1.46
23983--24017
2
17.5
2
100
0
70
51
0
0
48
1.00
24710--24747
19
2.0
19
100
0
76
36
21
15
26
1.93
25192--25256
15
4.1
15
73
11
58
16
27
24
30
1.97
25186--25253
33
2.1
33
91
0
109
19
23
27
29
1.98
29261--29298
19
2.0
19
100
0
76
42
5
15
36
1.70
29474--29524
20
2.5
21
78
12
61
54
11
3
29
1.54
37608--37668
27
2.2
27
88
2
86
9
27
6
55
1.57
40983--41027
21
2.1
21
83
0
54
77
17
4
0
0.92

Tables:   1

The End!