Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014542.1 Corchorus capsularis cultivar CVL-1 contig14563, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66165

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1210--1259
21
2.3
22
86
10
75
34
26
8
32
1.85
1222--1264
21
2.0
21
100
0
86
34
18
9
37
1.83
1593--1635
11
3.9
11
90
0
68
46
6
4
41
1.51
1589--1635
22
2.1
22
96
0
85
46
6
4
42
1.48
7761--7795
18
1.9
18
88
0
52
45
17
2
34
1.63
9637--10016
128
3.0
127
94
2
654
39
14
15
30
1.87
14373--14480
56
1.9
56
92
0
180
36
11
15
37
1.83
23402--23441
1
40.0
1
94
0
71
97
0
0
2
0.17
29510--29542
11
3.0
11
95
0
57
48
18
15
18
1.81
29529--29587
26
2.3
26
88
2
84
55
8
13
22
1.64
35182--36965
322
5.6
319
82
6
1744
33
15
15
36
1.89
43186--43211
13
2.0
13
100
0
52
23
15
7
53
1.67
44084--44160
39
2.0
39
89
0
118
29
25
10
33
1.89
48746--48803
30
2.0
29
83
10
73
53
6
8
31
1.58
50183--50224
21
2.0
21
90
0
66
28
19
19
33
1.96
60696--60748
2
26.0
2
76
3
52
43
5
5
45
1.51
62554--62584
2
15.5
2
100
0
62
51
0
0
48
1.00
66027--66126
2
54.5
2
69
23
60
46
0
2
52
1.12
65951--66050
39
2.6
39
86
0
137
36
12
0
52
1.39
66050--66077
5
5.6
5
100
0
56
60
0
0
39
0.97
66027--66126
7
13.6
8
65
24
60
46
0
2
52
1.12

Tables:   1

The End!