Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014543.1 Corchorus capsularis cultivar CVL-1 contig14564, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77755

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3381--3411
2
15.5
2
100
0
62
51
0
0
48
1.00
5932--5967
2
18.0
2
100
0
72
50
0
0
50
1.00
6515--6547
17
2.0
17
88
5
50
51
9
33
6
1.58
8114--8563
84
5.0
86
74
17
251
27
27
15
29
1.96
8284--8470
90
2.2
84
82
10
216
27
29
14
28
1.95
8386--8552
81
2.0
83
80
5
187
26
28
16
28
1.97
8800--8845
1
46.0
1
100
0
92
0
0
0
100
0.00
10766--10799
2
17.5
2
93
6
61
50
0
0
50
1.00
17554--17582
3
9.7
3
100
0
58
68
0
31
0
0.89
27904--27972
34
2.0
35
97
2
131
21
14
2
60
1.47
29053--29082
15
2.0
15
100
0
60
33
6
13
46
1.69
32134--32168
18
1.9
18
94
0
61
37
5
40
17
1.73
59632--59743
27
4.1
27
77
6
102
33
14
39
13
1.85
59723--59874
54
2.8
54
78
2
153
29
18
30
21
1.97
59734--59877
27
5.3
28
71
6
91
29
18
30
22
1.97
62733--62778
23
2.0
23
100
0
92
13
30
13
43
1.81
62810--62845
18
2.0
18
100
0
72
22
22
0
55
1.44
62948--62977
15
2.1
15
93
6
53
50
10
13
26
1.73
64618--64658
19
2.2
19
100
0
82
21
4
17
56
1.60
72245--72471
93
2.4
93
91
0
355
17
29
37
14
1.90
73903--73982
40
2.1
38
86
11
112
55
5
16
23
1.61

Tables:   1

The End!