Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014547.1 Corchorus capsularis cultivar CVL-1 contig14568, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115108

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124--583
31
15.5
31
85
8
520
33
20
15
31
1.93
124--635
62
8.8
59
79
14
461
32
19
15
32
1.93
562--633
25
2.9
25
83
6
101
31
18
16
33
1.93
562--647
25
3.5
24
78
7
82
33
17
15
33
1.91
6891--6944
29
2.0
27
85
10
74
61
11
7
20
1.53
9014--9040
2
13.5
2
100
0
54
51
0
0
48
1.00
24512--24569
29
2.0
29
93
3
100
44
15
18
20
1.86
24558--25045
243
2.0
243
99
0
967
35
13
16
33
1.88
42658--42703
4
12.5
4
82
17
64
28
0
21
50
1.49
42661--42707
10
4.5
10
89
10
76
27
0
21
51
1.48
42658--42699
14
3.0
14
85
0
66
28
0
21
50
1.49
44264--44413
50
3.0
50
93
0
255
26
22
19
32
1.97
48863--48960
50
2.0
50
97
0
187
25
20
22
31
1.98
48987--49082
50
1.9
49
83
10
124
33
17
8
40
1.80
49396--49507
31
3.9
30
74
20
105
15
18
28
37
1.91
49401--49503
53
1.9
53
90
0
161
16
18
27
37
1.92
68380--68426
9
5.1
9
82
5
58
48
0
0
51
1.00
68365--68478
34
3.4
32
77
10
102
53
0
0
45
1.06
68426--68489
3
21.0
3
90
3
83
59
0
0
40
0.97
68395--68489
6
15.3
6
75
9
84
57
0
0
42
0.98
68395--68489
9
10.2
9
76
7
84
57
0
0
42
0.98
68352--68489
28
5.1
27
76
8
113
54
0
0
44
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68400--68491
34
2.6
35
81
8
98
57
0
0
42
0.98
71935--71989
27
2.0
27
96
0
101
34
16
21
27
1.95
75681--75783
52
2.0
52
100
0
206
17
21
9
51
1.74
77311--77388
29
2.6
29
80
12
86
47
15
16
20
1.83
86903--86942
18
2.3
17
86
4
53
7
17
60
15
1.57
97259--97407
74
2.0
74
94
2
264
40
9
30
20
1.84
98544--98570
4
6.8
4
100
0
54
51
0
0
48
1.00
101348--101386
20
2.0
20
85
10
53
64
15
0
20
1.30
115023--115061
13
2.9
13
84
3
51
0
17
2
79
0.84

Tables:   1

The End!