Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001455.1 Corchorus capsularis cultivar CVL-1 contig01455, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6585
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32


Found at i:697 original size:18 final size:18

Alignment explanation


    Indices: 674--709  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        664 CATACATTTA

                       *      
        674 ATTATTAGATTGATTATT
          1 ATTATTAGATTAATTATT

                              
        692 ATTATTAGATTAATTATT
          1 ATTATTAGATTAATTATT

        710 CATCGTCTCG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56


Consensus pattern (18 bp):   
ATTATTAGATTAATTATT

Found at i:3054 original size:18 final size:18

Alignment explanation


    Indices: 3031--3088  Score: 89
    Period size: 18  Copynumber: 3.2  Consensus size: 18

       3021 GGAACACAAT

                    *         
       3031 CTGTGTTCAGTGCTGGGA
          1 CTGTGTTCGGTGCTGGGA

                              
       3049 CTGTGTTCGGTGCTGGGA
          1 CTGTGTTCGGTGCTGGGA

            *   *             
       3067 TTGTATTCGGTGCTGGGA
          1 CTGTGTTCGGTGCTGGGA

                
       3085 CTGT
          1 CTGT

       3089 ATTAGCAGGT


Statistics
Matches: 36,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   36  1.00

ACGTcount: A:0.09, C:0.16, G:0.40, T:0.36


Consensus pattern (18 bp):   
CTGTGTTCGGTGCTGGGA

Done.