Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014551.1 Corchorus capsularis cultivar CVL-1 contig14572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 157348
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:126 original size:23 final size:23
Alignment explanation
Indices: 100--148 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
90 ATACGGTGAA
100 AATTAAGCACTTATTTTGAATGG
1 AATTAAGCACTTATTTTGAATGG
123 AATTAAGCACTTATTTTGAATGG
1 AATTAAGCACTTATTTTGAATGG
146 AAT
1 AAT
149 GAAGTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (23 bp):
AATTAAGCACTTATTTTGAATGG
Found at i:158 original size:19 final size:20
Alignment explanation
Indices: 111--158 Score: 53
Period size: 23 Copynumber: 2.3 Consensus size: 20
101 ATTAAGCACT
*
111 TATTTTGAATGGAATTAAGCAC
1 TATTTTGAATGGAATGAAG--C
133 TTATTTTGAATGGAATGAAG-
1 -TATTTTGAATGGAATGAAGC
153 TATTTT
1 TATTTT
159 TCATTGGAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 6 0.25
23 18 0.75
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (20 bp):
TATTTTGAATGGAATGAAGC
Found at i:5158 original size:12 final size:12
Alignment explanation
Indices: 5138--5176 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
5128 AAGCTTTATG
5138 GTTCGCGTTTTC
1 GTTCGCGTTTTC
* * *
5150 GTTCACGTTATG
1 GTTCGCGTTTTC
5162 GTTCGCGTTTTC
1 GTTCGCGTTTTC
5174 GTT
1 GTT
5177 TCTGCAGGGA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.05, C:0.21, G:0.26, T:0.49
Consensus pattern (12 bp):
GTTCGCGTTTTC
Found at i:6928 original size:13 final size:13
Alignment explanation
Indices: 6910--6944 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
6900 TATTATTACC
6910 TGGTGCTTGTACT
1 TGGTGCTTGTACT
6923 TGGTGCTTGTACT
1 TGGTGCTTGTACT
6936 TGGTGCTTG
1 TGGTGCTTG
6945 ATGGGAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.06, C:0.14, G:0.34, T:0.46
Consensus pattern (13 bp):
TGGTGCTTGTACT
Found at i:7088 original size:1 final size:1
Alignment explanation
Indices: 7047--7076 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
7037 GTAAGTTCAG
7047 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7077 GGGAATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7789 original size:20 final size:20
Alignment explanation
Indices: 7764--7803 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7754 CCGTTAATTA
*
7764 AAACGTGTCACTCGTGTCTT
1 AAACGTGTCAATCGTGTCTT
*
7784 AAACGTGTTAATCGTGTCTT
1 AAACGTGTCAATCGTGTCTT
7804 GACACGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (20 bp):
AAACGTGTCAATCGTGTCTT
Found at i:8228 original size:58 final size:60
Alignment explanation
Indices: 8128--8241 Score: 214
Period size: 58 Copynumber: 1.9 Consensus size: 60
8118 TCGACACAAA
8128 ATTGCTCTAAGTTTGATAAGAATATGTTTCTGTCTCAATGAATCAAGAAAAAATCAGAGG
1 ATTGCTCTAAGTTTGATAAGAATATGTTTCTGTCTCAATGAATCAAGAAAAAATCAGAGG
8188 ATTGCTCTAAGTTTGATAAGAATATG-TT-TGTCTCAATGAATCAAGAAAAAATCA
1 ATTGCTCTAAGTTTGATAAGAATATGTTTCTGTCTCAATGAATCAAGAAAAAATCA
8242 AGAAAAAATC
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
58 26 0.48
59 2 0.04
60 26 0.48
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.32
Consensus pattern (60 bp):
ATTGCTCTAAGTTTGATAAGAATATGTTTCTGTCTCAATGAATCAAGAAAAAATCAGAGG
Found at i:8242 original size:11 final size:11
Alignment explanation
Indices: 8226--8252 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8216 TGTCTCAATG
8226 AATCAAGAAAA
1 AATCAAGAAAA
8237 AATCAAGAAAA
1 AATCAAGAAAA
8248 AATCA
1 AATCA
8253 GAGGGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.70, C:0.11, G:0.07, T:0.11
Consensus pattern (11 bp):
AATCAAGAAAA
Found at i:14570 original size:34 final size:33
Alignment explanation
Indices: 14532--14597 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
14522 AACTTAATCA
* *
14532 CATGGATTTTGTGGCCCAAAAAATAATACTTTCT
1 CATGGATCTTGTGGCCCAAAAAAAAAT-CTTTCT
14566 CATGGATCTTGTGGCCCAAAAAAAAATCTTTC
1 CATGGATCTTGTGGCCCAAAAAAAAATCTTTC
14598 ATGGAACTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 5 0.17
34 25 0.83
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (33 bp):
CATGGATCTTGTGGCCCAAAAAAAAATCTTTCT
Found at i:32873 original size:6 final size:6
Alignment explanation
Indices: 32862--32889 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
32852 TTGAAATCTC
32862 AAAACA AAAACA AAAACA AAAACA AAAA
1 AAAACA AAAACA AAAACA AAAACA AAAA
32890 TTGCTTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACA
Found at i:33454 original size:9 final size:9
Alignment explanation
Indices: 33427--33460 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
33417 AATCACTATC
33427 CTTTCCTTT
1 CTTTCCTTT
33436 CCTTTCCTTT
1 -CTTTCCTTT
*
33446 CTTTTCTTT
1 CTTTCCTTT
33455 CTTTCC
1 CTTTCC
33461 ATATTTATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (9 bp):
CTTTCCTTT
Found at i:35260 original size:18 final size:16
Alignment explanation
Indices: 35227--35258 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
35217 TCATCTACTC
35227 TTTTTTTGTATAATAT
1 TTTTTTTGTATAATAT
*
35243 TTTTTTTTTATAATAT
1 TTTTTTTGTATAATAT
35259 ATCCAAAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (16 bp):
TTTTTTTGTATAATAT
Found at i:56139 original size:33 final size:34
Alignment explanation
Indices: 56031--56183 Score: 186
Period size: 34 Copynumber: 4.6 Consensus size: 34
56021 GATGACCCGT
56031 GCCGCCCCACTAGGGCGGCTTCACCATTGGGCAG
1 GCCGCCCCACTAGGGCGGCTTCACCATTGGGCAG
56065 GCCGCCCCACTAGGGCGGCTTCACCATTGGGCAG
1 GCCGCCCCACTAGGGCGGCTTCACCATTGGGCAG
** ***
56099 GCCGCCCCACTAGGGCGGCTTCATTA-TGAATAG
1 GCCGCCCCACTAGGGCGGCTTCACCATTGGGCAG
* * * *
56132 GCCGCCCCACTGGGGCGGCTTCGCCA--CGACAG
1 GCCGCCCCACTAGGGCGGCTTCACCATTGGGCAG
* *
56164 GCCGCCCCAGTGGGGCGGCT
1 GCCGCCCCACTAGGGCGGCT
56184 CGGCTAATTT
Statistics
Matches: 106, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
32 22 0.21
33 26 0.25
34 58 0.55
ACGTcount: A:0.14, C:0.38, G:0.33, T:0.14
Consensus pattern (34 bp):
GCCGCCCCACTAGGGCGGCTTCACCATTGGGCAG
Found at i:56327 original size:14 final size:15
Alignment explanation
Indices: 56298--56339 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
56288 GACTCAGTGT
*
56298 AAAAGTGTAAAAAGGGT
1 AAAAGTGT--AAAGGGC
56315 AAAAG-GTAAAGGGC
1 AAAAGTGTAAAGGGC
56329 AAAAGTGTAAA
1 AAAAGTGTAAA
56340 AAGTGGGACG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 11 0.48
15 5 0.22
16 2 0.09
17 5 0.22
ACGTcount: A:0.55, C:0.02, G:0.29, T:0.14
Consensus pattern (15 bp):
AAAAGTGTAAAGGGC
Found at i:56381 original size:2 final size:2
Alignment explanation
Indices: 56376--56405 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
56366 TTTTTAATTG
56376 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
56406 TTTGTTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57661 original size:321 final size:321
Alignment explanation
Indices: 56600--64682 Score: 10235
Period size: 322 Copynumber: 25.2 Consensus size: 321
56590 TCATTTTTTT
* * * * * * * *
56600 AATTAATTTTTAGTTAAATCGAAATAAGATTCAGATGTTCGTAAAAACTAATCGTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * ** * *
56665 GTAGCTGACATTTGACTCGATGAATATAGATATTTCAAGAAGTCTTTGTGCCAAAACTCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* * * * *
56730 AATTGAGCC-GGAACTCCGGAACG-GTTTTTTTAGCCAAAAACCGTGATAGTTGGTATACGATTT
131 AATTGAGCCAGG-GCTCCGGAACGCG--TTTTTATCCAAAAACCGTGATGGTTAGTACACGATTT
* ** * *
56793 CAGCTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAGATAATATAT
193 CGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGA-AAAATATAT
* * *
56858 AATTCAACGCCAAAAAAGATTTACGGGCTTTTCACGCTTCTAATATCGTTTTTACATTTTTTTCC
257 AATTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCC
56923 G
321 G
56924 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * *
56989 ATTGCTGAGATTTAGTTCGATAAATATAGGTATTTCAAGGAGTCCTTT-TGCAAAAAATCATGCA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGT-CTTTGTGCCAAAAATCATGCA
* * * *
57053 AAATTAAGACAGGGCTCCGGAACGTGTTTTTATCCAAAAACCGTGAT-GTAACGTACACGATTTC
130 AAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTA-GTACACGATTTC
* * * * * *
57117 GGCTAAAAACTGATCTGAAAATTTCTTTCTCAAATTTTTGTCACAATACACAGAAAAAAATGTAT
194 GGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAG--AAAAATATAT
* * * * *
57182 AATTTAATGTCAAAAAGATTGACGGGATTTTCAAGCTTCTAATATCG-TTTTCCAATTTTTTCCG
257 AATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
*
57246 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTTGAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * *
57311 ATTGTTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTTTGCCAAAACTCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* *
57376 AATTGAGTCAGGGCTCCCGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCGG
131 AATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* ** *
57441 CTAAAAATTGACCCGAATTTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAATGTATAATT
196 CTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAATATATAATT
* * * *
57506 TAATGCCAAAAAGATTGACGGGCTGTTCACGCTTCTAATATCGTTTTCCCAATTTTTTCCG
261 CAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
* **
57567 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGGTAAAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* *
57632 ATTGCTGAGATTAT-GTTTGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCA
66 ATTGCTGAGATT-TGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCA
* * *
57696 AAATTGAGCCGGGGCTCCGGAACGCGTTTTTATCCAAAAACGGTGATGGTTAGTACACGATTTCA
130 AAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCG
** *
57761 GCTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAA
195 GCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATATATAA
* * *
57826 TTCAACGCCGAAAAAGATTTACGGGCTTTTCATGCTTCTAATATCGTTTTTCC-ATTTTTTCCA
259 TTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
57889 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
57954 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCTTT-TGCCAAAAATCATGCA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGT-CTTTGTGCCAAAAATCATGCA
* * * *
58018 AAATTGCGTCAGGGCTCTGGAACGCGTTTTTATCCAAAAACTGTGATGGTTAGTACACGATTTCG
130 AAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * * * *
58083 CCTAAAAACTGACCCG-AAATTCTTTTTCTCAATTTTTTGTCACAATTCACATAAAACATGTATA
195 GCTAAAAACTGACCCGAAAATT-TTTTTCTCAATTTTTTGCCACAATACACAGAAAA-ATATATA
* * * * ** *
58147 ATTTAACGCTAAAAGGATTGACTGGAATTTCACGCTTCTAATATCGTTTTTCTAATTTTTTCCG
258 ATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
* * *
58211 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGGT-AAAAAAAAAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * * *
58275 ATTGCTGAGATTTGATTCGATGAAAATAGATATTTCAAAGAGTCTTTGCGCCAAAAATCATGGAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* * * * *
58340 AATTGACCCGGGGCTCTGAAACGCGTTTTTATCCAAAAACC-TGAT-G-AACGTACACGATTTCG
131 AATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTA-GTACACGATTTCG
** *
58402 GCTAAAAACTGA-CCGAATTTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTATAA
195 GCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATATATAA
* * * *
58466 TTTAATGCCAAAAATATTGACGGGCTTTTCACGCTTCTAATATCGATTCGTT-C-ATTTTTTCCG
259 TTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCG-TT-TTTCCAATTTTTTCCG
* *
58529 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCCAAAAAACAAATCCTCATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * * *
58594 ATTGCTGAGATTTGGTTCAACGAATATAGATATTTCAAAGAGTCTTTGTGCTAAGAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* * *
58659 TATTGAGCCAGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTATACGATTTCAG
131 AATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTC-G
* * ** *
58724 G-TTAAAACTAACCCGAAAAGATTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAA
195 GCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATATATAA
* * * * *
58788 TTCAACGCCAAAAAAGATTGATGGGCTTTTTACGCTTCTAATATCGTTTTTCTATTTTTTTCGG
259 TTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
* * * *
58852 AATTAATTTCTAATTAAATCGAAAAAAGATTGAGATGCTCGAAAAAGCAACTCTTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * *
58917 ATTGTTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTTTTTTTTTTGCCAAAAATCATG
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAG---TCTTTGTGCCAAAAATCATG
* * * * * *
58982 CAAAATTTAGCCAAGGCTCTGGAACGCGTTTTTATCCAATAACTGTGATGGTTAGTATACGATTT
128 CAAAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTT
* * * * *
59047 CGGCTAAAAATTTACTCG-AAATATTTTTTCTCAATTTTTTGACACAATACACAGAAAAAATTTA
193 CGGCTAAAAACTGACCCGAAAAT-TTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATATA
* * * * *
59111 TAATTCAACACCACAAATATTGATGGGC-TTTCACGCTTCTAATATCGTTTTTCC-ATTTTTCCC
256 TAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCC
59174 G
321 G
* * * * *
59175 AATTAATTTCTAAATAAATGGAAATAAGATTGAAATGCTCGAAAAAATAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * *
59240 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTCTGTGCCAAAAATCATGCGA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* * * *
59305 AATTGAG-CTGGCGCTCCGGAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCA
131 AATTGAGCCAGG-GCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCG
* ** * *
59369 GCT-GAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATAAACAGAAAAAATATATAA
195 GCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATATATAA
* * * * *
59433 TTCAACGCCAAAAAAGATTTACGGACTTTTCATGCTTATAATATCGTTTTTCCATTTTTTTCCG
259 TTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
59497 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
*
59562 ATTGCTGAGATTCGGTTCGATGAATATAGATATTTCAAGGAGTCCTTT-TGGCCAAAAATCATGC
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGT-CTTTGT-GCCAAAAATCATGC
* * *
59626 AAAATTGAGTCAGGGCTCCGGAACGCGTTTTTTTTCCAAAAACTGTGATGGTTAGTACACGATTT
129 AAAATTGAGCCAGGGCTCCGGAACGCG-TTTTTATCCAAAAACCGTGATGGTTAGTACACGATTT
* * * * * *
59691 CGCCTAAAAATTAACCCGAAAA-TTTTTTCTCAATTTTTTGCAACAATACACATAAAACATGTAT
193 CGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA-ATATAT
* * * * * *
59755 AATTTAACGCTAAAAAGATTGACTGACATTTCACGCTTCTAATATCGTTTTTCTAA-TTTTTCCG
257 AATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
* *
59819 AATTAATTTCTATTTAAATCGAAACAAGATTGAGATGGT--AAAAAA-AAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * * *
59881 ATTGCTGAGATTTGATTCGATGAAAATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCTTGGAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* * *
59946 AATTGAGCCGGGGCTCCGGAACGCGTTTCTATCCAAAAACTGTGATGGTTAGTACACGATTTCGG
131 AATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTC-G
* ** * *
60011 GCTAAAAACTGATCCG-AAATTTTTTTCTCTCTATTTTTGCCACAAAACACAGAAAAAATGTATA
195 GCTAAAAACTGACCCGAAAATTTTTTTCTCAAT-TTTTTGCCACAATACACAG-AAAAATATATA
* * *
60075 ATTTAATGCCAAAAAGATTGACGGGCTTTTCACGCTTCAAATATCG-TTTTCCAA-TTTTTCCG
258 ATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
60137 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAGCAAATCCTTATATCCAA
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA-CAAATCCTTATATCCAA
*
60202 TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCA
65 TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCA
* * * *
60267 AAATTGAGCCAAGGCTCTGGAACGCGTTTTTATGC--AAA-----A---TT-GTACATGATTTCG
130 AAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * * *
60321 GCTAAAAACTTACTCGAAATATTTTCTTTTTCTCAATTTTTGTGTCAGAATACACAGAAAAAATA
195 GCTAAAAACTGACCCGAAA-A--TT-TTTTTCTCAATTTTT-TGCCACAATACACAG-AAAAATA
* * *
60386 TATAATTCAACGCCACAAATATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCC-A-TTTTC
254 TATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTT
60449 CCG
319 CCG
*
60452 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAGAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* *
60517 ATTGCTGAGATTTGGTTTGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* * * * *
60582 AATTGAGTCCGGGGCTCCGGAACTCGTTTTTAGCCAAAAACGGTGATGGTTAGTACACGATTTCA
131 AATTGAG-CCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCG
** *
60647 GCTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTTGCCACGATACACAGATAAAATATATA
195 GCTAAAAACTGACCCGAAAATTTTTTTCTCAA-TTTTTTGCCACAATACACAGA-AAAATATATA
* *
60712 ATTGAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCC-A--TTTTCCA
258 ATTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
* * *
60774 AATTAATTTCTAATTAAATCGAAAAAACATTGAGATGCTCGAAAAAGCAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * *
60839 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGAAGTTTTTTTTTGCCAAAAATCATGC
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAG--TCTTTGTGCCAAAAATCATGC
* * * * **
60904 AAAATTGAGCCAGGGCTCTGAAACGCGTTTCTCTCCAAAAACTATGATGGTTAGTACACGATTTC
129 AAAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTC
* **
60969 GGCTAAAAACTTACTGGAAATATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATATAT
194 GGCTAAAAACTGACCCGAAA-ATTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATATAT
** * *
61034 AATTCAACGCCAAAATTATTGTCGGGCTTTTCACGCTTCTAATATCATTTTTCC-ATTTTTTCCC
257 AATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTT-CC
61098 G
321 G
* *
61099 AATTAATTTCTAATTAAAACGAAACAAGATTGAGATGCTCGAAAAAATAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * *
61164 ATTGCTGAGATTTGGTTCGATCAATATAGATATCTCAAAGAGTTTTTGTGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* * * * *
61229 AATTGAGCC-GGCACTTCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTTGTACACGATTTCA
131 AATTGAGCCAGG-GCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * * * *
61293 GCTAAAAACTTATCCGAAAACGGTTTTTTTTTCAAATTTTTGCCA-AGATACACAG-AAGATATA
195 GCTAAAAACTGACCCGAAAA---TTTTTTTCTCAATTTTTTGCCACA-ATACACAGAAAAATATA
* * * *
61356 TAATTCAACGCCGAAAAAGATTTACGGGCTTTTCATGCTTCTAATATCGTTTTTCCATTTTTTTT
256 TAATTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTC
61421 CG
320 CG
*
61423 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTGATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* *
61488 ATTGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCATTTG-GCCAAAAATCTTGCA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTC-TTTGTGCCAAAAATCATGCA
* * *
61552 AAATTGAGCCAGGGCTCCGGAACGCATTTTTATCCAAAAATCGTGATGTTTAGTACACGATTTCG
130 AAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * * * *
61617 CCTAAAAACTGACCCGAACATTTTTTTTCTTAATTTTTT-CCACAATACACATAAAACATGTATA
195 GCTAAAAACTGACCCGAA-AATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA-ATATATA
* * * * *
61681 ATTTAACGCTAAAAAGATTGACTGGCTTTTCACGCTTCTAATATCGTTTTTCTAATTTTATCCG
258 ATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
* *
61745 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGGTCAAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * *
61810 ATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAAGAGTATTTGTGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
** * * *
61875 AATTGAGCTTGGGCTCCGG-A--CATTTTTAGCCAAAAACCGTGATGGTT-GTACACGATTTCAG
131 AATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* ** *
61936 CTAAAAACTTACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAAT
196 CTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATATATAAT
* * * * *
62001 TCAACGCCGAAAAACATTTACGGGCTTTTCATGCTTCTAATATCGTTGTTCCATTTTTTTTCCG
260 TCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCA-ATTTTTTCCG
*
62065 AATTAATTTCTAATTAAATCGAAACAATATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* *
62130 ATTGCTGAGATTTGGTTTGATGAATATAGATATTTC-AGGAAGTCCTTTGT-CCAAAAATCTTGC
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGG-AGT-CTTTGTGCCAAAAATCATGC
* *
62193 AAAATTGAGCCAGGGCTCCGGAACTCGTTTTTATCCAAAAAAACTGTGATGGTTAGTACACGATT
129 AAAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCC--AAAAACCGTGATGGTTAGTACACGATT
* * * *
62258 TC-GCATAAAAACTGACCCGAACATTTTTTTCTCAATTTTTTTCCACAATACACATAAAACATGT
192 TCGGC-TAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA-ATAT
* * ** * * *
62322 ATAATTTAACGCTAAAAAGATTGAATGGCTTTTCACACTTCTAATATCGTTTTTCTAATTTTATC
255 ATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTC
62387 CG
320 CG
* * *
62389 AATTAATTTCTAATTAAATCGAAACAAGATAGAGATGGT--AAAAAAAAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
** * * *
62452 ATTGCTGAGATTTTATTCGATGAATATAGATATTTCAAAAGAGTCTTTGTGAC-AAAATCATGAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTC-AAGGAGTCTTTGTGCCAAAAATCATGCA
* * * *
62516 AAATTGAGTTC-GGGCTCCTGAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTC
130 AAATTGAG-CCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTC
* * ** * * *
62580 AGCTAAAAACTTACCCGAAAACGTTTCTCTCAATTTTTTGCCACGATACACCGAACAAATATATA
194 GGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAA-AAATATATA
* * * * *
62645 ATTCAACACCAAAAAAGATTTATGGGCTTTTCACGCTTCTGATATCGTTTTTCCATTTTTTTCCC
258 ATTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTT-CC
62710 G
321 G
*
62711 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATACAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* *
62776 ATTGCTGAGATTTGGTTCGATTAATATAGATATTTCAAGGAGTTCTTTG-CCCAAAAATCATGCA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAG-TCTTTGTGCCAAAAATCATGCA
* * * * * *
62840 AAATTGAGGCAGGGCTCCGGAACGTGTTTTTATCCATAAACCTTCATGGTTAGCACACGATTTCG
130 AAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * *
62905 GCAAAAAACTG-CCTCGAAAA-TTTTTTCTTAA-TTTTTGCCACAATACACAGAAAAATGTATAA
195 GCTAAAAACTGACC-CGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAATATATAA
* * * *
62967 TTTAATGCTAAAAAGATTGCCGGGCTTTTCACGCTTCTAATATCGTTTTTCC-ATTTTTTCCG
259 TTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
* *
63029 AATTAGTTTCTAATTAAATCGAAACAAGATTGAGATGGTCGAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
*
63094 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* * * **
63159 AATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTCAT
131 AATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCGG
** **
63224 CTAAAAACTGACCCGAAAAAGTTTTTCTCAATTTTTTGCCATGATACACAGAAAAAATATATAAT
196 CTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATATATAAT
* * **
63289 TCAACGTCGAAAAAGATTGACAGGCTTTTCACGCTTCTAATATTATTTTTCC-ATTTTTTCCG
260 TCAACG-CCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
*
63351 AATTAATTTCTAATTAAATAGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* *
63416 ATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* * * *
63481 AATTGAG-CAGGTCTCCGGAACACGTTTTTATCCAAATACTGTGATGGTTAGTACACGATTTCGG
131 AATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCGG
*
63545 CTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAATTTATAATT
196 CTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAATATATAATT
* ** * * * ** *
63610 TATTGCCATAAGGATTGACGGGCTTTTCACGCTTCTAATATCATTTTTAAAATTTTTTCCA
261 CAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
* *
63671 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGGT-AAAAAAACCAAATCCTTATATCCAA
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA-CAAATCCTTATATCCAA
* * * * * *
63735 TATTGCTGAGATTTGATTCGATAAATATAGATATTTCAAAGACTGTTTGTGCCAAAAATAATGCA
65 TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCA
* * * * * *
63800 AAATTGAGCCGGGGATCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTATATGATTTCA
130 AAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * ** * * *
63865 GCTAAAAACTAACTCGAAAACATTTTTCTCAATTTTTTGCTACGATACACAGAAAAAAAATATAA
195 GCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATATATAA
*
63930 TTCAACGCCAAAAAATATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCC-A-TTTTTCCG
259 TTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
* * *
63992 AATTAATTTCTAATTAAATCGAAAAAAGATTGAGATGCTCCAAAAAGCAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* *
64057 ATTACTGAGATTTGGTTCGATGAATATAGATATTTCAAGTAGTCTTTGTGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
* * * * * *
64122 AATTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACGCGATTTCAG
131 AATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCGG
** * * * * * **
64187 CTAAAATTTTTCAAAAACTGGTCCGTAAAGTTTTTCCTCAATTTTTTGCAACAGTACTTAGAAAA
196 C---------T-AAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA
* * * *
64252 A-ATA-AATTCAACGCCAAAAAAAACTGAAGGG-TTTTCACGCTTCTAATATCGTTGTTCC-ATT
251 ATATATAATTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATT
**
64313 TTTTCTA
315 TTTTCCG
* * * * * ** * *
64320 AATTTATTTCTAA-TATATCGAAATAAGATTCAGATGCTTGTTAAAACAAATCCTTAAATCTAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * * * *
64384 -GTGCCTGAGATTTGGTTAGATGAATATAAATATTTCAAGAAGTCTTTATGCCAAAAACCATGCA
66 ATTG-CTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCA
* ** * ** * * * * *
64448 AAACTGAGTTGAGGCCT-CAAAACGCGTTTTGAGCC--AAACTCGTTATGGTTAGTTCCCGATTT
130 AAATTGAG-CCAGGGCTCCGGAACGCGTTTTTATCCAAAAAC-CGTGATGGTTAGTACACGATTT
* * * *
64510 CGGCT-AAAATTGACCCG--ATTTTTTTTCTCAA-TTTTTGCCACAATACTCATAAAAAATATAT
193 CGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACA-GAAAAATATAT
* * * ** * ** * *
64571 AATTGAACACAAAAAAGATT-AAAGGTTTTTCATACTTCTAATATTGTTTTTCC-ATTTTTT-TG
257 AATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
* * * * *
64633 AAGTAATTTCTAACTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAA
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAA
64683 GTTTTTAAAT
Statistics
Matches: 6777, Mismatches: 823, Indels: 328
0.85 0.10 0.04
Matches are distributed among these distances:
310 14 0.00
311 13 0.00
312 18 0.00
313 32 0.00
314 166 0.02
315 166 0.02
316 6 0.00
317 65 0.01
318 483 0.07
319 454 0.07
320 595 0.09
321 913 0.13
322 1611 0.24
323 813 0.12
324 694 0.10
325 245 0.04
326 252 0.04
327 145 0.02
328 47 0.01
329 3 0.00
330 6 0.00
331 36 0.01
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (321 bp):
AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAA
AATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCGG
CTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAATATATAATT
CAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCG
Found at i:62202 original size:642 final size:643
Alignment explanation
Indices: 56600--66970 Score: 11158
Period size: 642 Copynumber: 16.2 Consensus size: 643
56590 TCATTTTTTT
* * * * * * * *
56600 AATTAATTTTTAGTTAAATCGAAATAAGATTCAGATGTTCGTAAAAACTAATCGTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * ** *
56665 GTAGCTGACATTTGACTCGATGAATATAGATATTTC-AAGAAGTCTTTGTGCCAAAACTCATGCA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAG-AGTCTTTGTGCCAAAAATCATGCA
** * * * *
56729 AAATTGAGCCGGAACTCCGGAACGGTTTTTTTAGCCAAAAACCGTGATAGTTGGTATACGATTTC
130 AAATTGAGCCGGGGCTCCGGAACCG--TTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* *
56794 AGCTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAGATAATATATA
193 AGCTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATA
* *
56859 ATTCAACGCCAAAAAAGATTTACGGGCTTTTCACGCTTCTAATATCGTTTTTACATTTTTTTCCG
258 ATTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCG
56924 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
323 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * *
56989 ATTGCTGAGATTTAGTTCGATAAATATAGGTATTTCAAGGAGTCCTTT-TGCAAAAAATCATGCA
388 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGT-CTTTGTGCCAAAAATCATGCA
* * * * *
57053 AAATTAAGACAGGGCTCCGGAACGTGTTTTTATCCAAAAACCGTGAT-GTAACGTACACGATTTC
452 AAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACTGTGATGGTTA-GTACACGATTTC
* * * * * *
57117 GGCTAAAAACTGATCTGAAAATTTCTTTCTCAAATTTTTGTCACAATACACAGAAAAAAATGTAT
516 GGCTAAAAACTGACCCGAAATTTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAAATGTAT
* * * * *
57182 AATTTAATGTCAAAAAGATTGACGGGATTTTCAAGCTTCTAATATCGTTTTCCAATTTTTTCCG
580 AATTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTCCG
*
57246 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTTGAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * *
57311 ATTGTTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTTTGCCAAAACTCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
* * * * *
57376 AATTGAGTCAGGGCTCCCGAACGCGTTTTTATCCAAAAACCGTGATGGTTAGTACACGATTTCGG
131 AATTGAGCCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG
* **** * *
57441 CTAAAAATTGACCCGAATTTTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATGTATAAT
195 CTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAAT
* * * * *
57505 TTAATGCC-AAAAAGATTGACGGGCTGTTCACGCTTCTAATATCGTTTTCCCAATTTTTTCCGAA
260 TCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAA
* **
57569 TTAATTTCTAATTAAATCGAAACAAGATTGAGATGGTAAAAAAAACAAATCCTTATATCCAATAT
325 TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATAT
* *
57634 TGCTGAGATTAT-GTTTGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAAA
390 TGCTGAGATT-TGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAA
* * *
57698 ATTGAGCCGGGGCTCCGGAACGCGTTTTTATCCAAAAACGGTGATGGTTAGTACACGATTTCAGC
454 ATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACTGTGATGGTTAGTACACGATTTCGGC
*** * *
57763 TAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAATT
519 TAAAAACTGACCCGAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTATAATT
* * * * *
57828 CAACGCCGAAAAAGATTTACGGGCTTTTCATGCTTCTAATATCGTTTTTCCATTTTTTCCA
584 TAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTCCG
57889 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
*
57954 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCTTT-TGCCAAAAATCATGCA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGT-CTTTGTGCCAAAAATCATGCA
* * * * * *
58018 AAATTGCGTCAGGGCTCTGGAACGCGTTTTTATCCAAAAACTGTGATGGTTAGTACACGATTTC-
130 AAATTGAGCCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCA
* * * * * * *
58082 GCCTAAAAACTGACCCGAAATTC-TTTTTCTCAATTTTTTGTCACAATTCACATAAAACATGTAT
194 G-CTAAAAACTGACCCGAAA-ACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATAT
* * * * ** * *
58146 AATTTAACG-CTAAAAGGATTGACTGGAATTTCACGCTTCTAATATCGTTTTTCTAATTTTTTCC
257 AATTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCC
* * *
58210 GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGGT-AAAAAAAAAAATCCTTATATCCAA
322 GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAA
* * * * *
58274 TATTGCTGAGATTTGATTCGATGAAAATAGATATTTCAAAGAGTCTTTGCGCCAAAAATCATGGA
387 TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCA
* * * * * *
58339 AAATTGACCCGGGGCTCTGAAACGCGTTTTTATCCAAAAAC-CTGAT-G-AACGTACACGATTTC
452 AAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACTGTGATGGTTA-GTACACGATTTC
*
58401 GGCTAAAAACTGA-CCGAATTTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTATA
516 GGCTAAAAACTGACCCGAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTATA
* * *
58465 ATTTAATGCCAAAAATATTGACGGGCTTTTCACGCTTCTAATATCGATTCGTTC-ATTTTTTCCG
581 ATTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCG-TT-TTTCAATTTTTTCCG
* *
58529 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCCAAAAAACAAATCCTCATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * *
58594 ATTGCTGAGATTTGGTTCAACGAATATAGATATTTCAAAGAGTCTTTGTGCTAAGAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
* * *
58659 TATTGAGCCAGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTATACGATTTCAG
131 AATTGAGCCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG
* * *
58724 GTTAAAACTAACCCGAAAA-GATTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAA
195 CTAAAAACTGACCCGAAAACG-TTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAA
* * * *
58788 TTCAACGCCAAAAAAGATTGATGGGCTTTTTACGCTTCTAATATCGTTTTTCTATTTTTTTCGGA
259 TTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGA
* * * *
58853 ATTAATTTCTAATTAAATCGAAAAAAGATTGAGATGCTCGAAAAAGCAACTCTTTATATCCAATA
324 ATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATA
* * *
58918 TTGTTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTTTTTTTTTTGCCAAAAATCATGC
389 TTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAG---TCTTTGTGCCAAAAATCATGC
* * * * *
58983 AAAATTTAGCCAAGGCTCTGGAACGCGTTTTTATCCAATAACTGTGATGGTTAGTATACGATTTC
451 AAAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACTGTGATGGTTAGTACACGATTTC
* * * * * *
59048 GGCTAAAAATTTACTCGAAATATTTTTTCTCAATTTTTTGACACAATACACAGAAAAAATTTATA
516 GGCTAAAAACTGACCCGAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTATA
* * * * * * *
59113 ATTCAACACCACAAATATTGATGGGC-TTTCACGCTTCTAATATCGTTTTTCCATTTTTCCCG
581 ATTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTCCG
* * * * *
59175 AATTAATTTCTAAATAAATGGAAATAAGATTGAAATGCTCGAAAAAATAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* *
59240 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTCTGTGCCAAAAATCATGCGA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
* * *
59305 AATTGAGCTGGCGCTCCGGAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCAG
131 AATTGAGCCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG
* *
59370 CT-GAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATAAACAGAAAAAATATATAAT
195 CTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAAT
* * * *
59434 TCAACGCCAAAAAAGATTTACGGACTTTTCATGCTTATAATATCGTTTTTCCATTTTTTTCCGAA
260 TCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAA
59499 TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATAT
325 TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATAT
*
59564 TGCTGAGATTCGGTTCGATGAATATAGATATTTCAAGGAGTCCTTT-TGGCCAAAAATCATGCAA
390 TGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGT-CTTTGT-GCCAAAAATCATGCAA
* *
59628 AATTGAGTCAGGGCTCCGGAACGCGTTTTTTTTCCAAAAACTGTGATGGTTAGTACACGATTTCG
453 AATTGAGCCAGGGCTCCGGAACGCG-TTTTTATCCAAAAACTGTGATGGTTAGTACACGATTTCG
* * * * * * *
59693 CCTAAAAATTAACCCGAAA-ATTTTTTCTCAATTTTTTGCAACAATACACATAAAACATGTATAA
517 GCTAAAAACTGACCCGAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTATAA
* * * *
59757 TTTAACGCTAAAAAGATTGACTGACATTTCACGCTTCTAATATCGTTTTTCTAA-TTTTTCCG
582 TTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTC-AATTTTTTCCG
* *
59819 AATTAATTTCTATTTAAATCGAAACAAGATTGAGATGGT--AAAAAA-AAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * *
59881 ATTGCTGAGATTTGATTCGATGAAAATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCTTGGAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
* * * *
59946 AATTGAGCCGGGGCTCCGGAACGCGTTTCTATCCAAAAACTGTGATGGTTAGTACACGATTTCGG
131 AATTGAGCCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC-A
* ** ** * * *
60011 GCTAAAAACTGATCCG-AAATTTTTTTCTCTCTATTTTTGCCACAAAACACAGAAAAAATGTATA
194 GCTAAAAACTGACCCGAAAACGTTTTTCTCAAT-TTTTTGCCACGATACACAGAAAAAATATATA
* * * *
60075 ATTTAATGCC-AAAAAGATTGACGGGCTTTTCACGCTTCAAATATCG-TTTTCCA-ATTTTTCCG
258 ATTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCG
60137 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAGCAAATCCTTATATCCAA
323 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA-CAAATCCTTATATCCAA
*
60202 TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCA
387 TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCA
* * * *
60267 AAATTGAGCCAAGGCTCTGGAACGCGTTTTTATGC--AAA-----A---TT-GTACATGATTTCG
452 AAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACTGTGATGGTTAGTACACGATTTCG
* * * * *
60321 GCTAAAAACTTACTCGAAATATTTTCTTTTTCTCAATTTTTGTGTCAGAATACACAGAAAAAATA
517 GCTAAAAACTGACCCG-AA-A-TTT-TTTTTCTCAATTTTT-TGCCACAATACACAGAAAAAATG
* * * * *
60386 TATAATTCAACGCCACAAATATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTCC
577 TATAATTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTC
60450 CG
642 CG
*
60452 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAGAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
*
60517 ATTGCTGAGATTTGGTTTGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
*
60582 AATTGAGTCCGGGGCTCCGGAACTCGTTTTTAGCCAAAAACGGTGATGGTTAGTACACGATTTCA
131 AATTGAG-CCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCA
*
60647 GCTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTTGCCACGATACACAGATAAAATATATA
194 GCTAAAAACTGACCCGAAAACGTTTTTCTCAA-TTTTTTGCCACGATACACAGAAAAAATATATA
* *
60712 ATTGAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCA---TTTTCCA
258 ATTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCG
* * *
60774 AATTAATTTCTAATTAAATCGAAAAAACATTGAGATGCTCGAAAAAGCAAATCCTTATATCCAAT
323 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * *
60839 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGAAGTTTTTTTTTGCCAAAAATCATGC
388 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAG--TCTTTGTGCCAAAAATCATGC
* * * * *
60904 AAAATTGAGCCAGGGCTCTGAAACGCGTTTCTCTCCAAAAACTATGATGGTTAGTACACGATTTC
451 AAAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACTGTGATGGTTAGTACACGATTTC
* ** *
60969 GGCTAAAAACTTACTGGAAATATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATATAT
516 GGCTAAAAACTGACCCGAAAT-TTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTAT
* ** * * *
61034 AATTCAACGCCAAAATTATTGTCGGGCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTCCCG
580 AATTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCAATTTTTT-CCG
* *
61099 AATTAATTTCTAATTAAAACGAAACAAGATTGAGATGCTCGAAAAAATAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * *
61164 ATTGCTGAGATTTGGTTCGATCAATATAGATATCTCAAAGAGTTTTTGTGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
** * *
61229 AATTGAGCCGGCACTTCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTTGTACACGATTTCAG
131 AATTGAGCCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG
* * * * * *
61294 CTAAAAACTTATCCGAAAACGGTTTTTTTTTCAAATTTTTGCCAAGATACACAG--AAGATATAT
195 CTAAAAACTGACCCGAAAAC-G--TTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATAT
* * * *
61357 AATTCAACGCCGAAAAAGATTTACGGGCTTTTCATGCTTCTAATATCGTTTTTCCATTTTTTTTC
257 AATTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCC
*
61422 GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTGATATCCAA
322 GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAA
* *
61487 TATTGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGAGTCATTTG-GCCAAAAATCTTGC
387 TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTC-TTTGTGCCAAAAATCATGC
* *
61551 AAAATTGAGCCAGGGCTCCGGAACGCATTTTTATCCAAAAA-TCGTGATGTTTAGTACACGATTT
451 AAAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACT-GTGATGGTTAGTACACGATTT
* * * *
61615 CGCCTAAAAACTGACCCGAACATTTTTTTTCTTAATTTTTT-CCACAATACACATAAAACATGTA
515 CGGCTAAAAACTGACCCGAA-ATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTA
* * *
61679 TAATTTAACGCTAAAAAGATTGACTGGCTTTTCACGCTTCTAATATCGTTTTTCTAATTTTATCC
579 TAATTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTC-AATTTTTTCC
61744 G
643 G
* *
61745 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGGTCAAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* *
61810 ATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAAGAGTATTTGTGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
** *
61875 AATTGAGCTTGGGCTCCGG-A-CATTTTTAGCCAAAAACCGTGATGGTT-GTACACGATTTCAGC
131 AATTGAGCCGGGGCTCCGGAACCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGC
*
61937 TAAAAACTTACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAATT
196 TAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAATT
* * * * *
62002 CAACGCCGAAAAACATTTACGGGCTTTTCATGCTTCTAATATCGTTGTTCCATTTTTTTTCCGAA
261 CAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTTCCGAA
*
62067 TTAATTTCTAATTAAATCGAAACAATATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATAT
325 TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATAT
* *
62132 TGCTGAGATTTGGTTTGATGAATATAGATATTTC-AGGAAGTCCTTTGT-CCAAAAATCTTGCAA
390 TGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGG-AGT-CTTTGTGCCAAAAATCATGCAA
*
62195 AATTGAGCCAGGGCTCCGGAACTCGTTTTTATCCAAAAAAACTGTGATGGTTAGTACACGATTTC
453 AATTGAGCCAGGGCTCCGGAACGCGTTTTTATCC--AAAAACTGTGATGGTTAGTACACGATTTC
* * *
62260 -GCATAAAAACTGACCCGAACA-TTTTTTTCTCAATTTTTTTCCACAATACACATAAAACATGTA
516 GGC-TAAAAACTGACCCGAA-ATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTA
* ** * *
62323 TAATTTAACGCTAAAAAGATTGAATGGCTTTTCACACTTCTAATATCGTTTTTCTAATTTTATCC
579 TAATTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTC-AATTTTTTCC
62388 G
643 G
* * *
62389 AATTAATTTCTAATTAAATCGAAACAAGATAGAGATGGT--AAAAAAAAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
** * *
62452 ATTGCTGAGATTTTATTCGATGAATATAGATATTTCAAAAGAGTCTTTGTGAC-AAAATCATGAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTC-AAAGAGTCTTTGTGCCAAAAATCATGCA
* * *
62516 AAATTGAGTTC-GGGCTCCTGAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTC
130 AAATTGAG-CCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* * * *
62580 AGCTAAAAACTTACCCGAAAACGTTTCTCTCAATTTTTTGCCACGATACACCGAACAAATATATA
193 AGCTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATA
* * * *
62645 ATTCAACACCAAAAAAGATTTATGGGCTTTTCACGCTTCTGATATCGTTTTTCCATTTTTTTCCC
258 ATTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT-CC
*
62710 GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATACAA
322 GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAA
* *
62775 TATTGCTGAGATTTGGTTCGATTAATATAGATATTTCAAGGAGTTCTTTG-CCCAAAAATCATGC
387 TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAG-TCTTTGTGCCAAAAATCATGC
* * * * *
62839 AAAATTGAGGCAGGGCTCCGGAACGTGTTTTTATCCATAAACCT-TCATGGTTAGCACACGATTT
451 AAAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCA-AAAACTGTGATGGTTAGTACACGATTT
* * *
62903 CGGCAAAAAACTG-CCTCGAAA-ATTTTTTCTTAA-TTTTTGCCACAATACACAG-AAAAATGTA
515 CGGCTAAAAACTGACC-CGAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTA
* * * *
62964 TAATTTAATGCTAAAAAGATTGCCGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCG
579 TAATTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTCCG
* *
63029 AATTAGTTTCTAATTAAATCGAAACAAGATTGAGATGGTCGAAAAAACAAATCCTTATATCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
63094 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
* *
63159 AATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTCAT
131 AATTGAGCCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG
* *
63224 CTAAAAACTGACCCGAAAAAGTTTTTCTCAATTTTTTGCCATGATACACAGAAAAAATATATAAT
195 CTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAAT
* * * **
63289 TCAACGTCGAAAAAGATTGACAGGCTTTTCACGCTTCTAATATTATTTTTCCA-TTTTTTCCGAA
260 TCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAA
*
63353 TTAATTTCTAATTAAATAGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATAT
325 TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATAT
* *
63418 TGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCAAAA
390 TGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAA
* * *
63483 TTGAG-CAGGTCTCCGGAACACGTTTTTATCCAAATACTGTGATGGTTAGTACACGATTTCGGCT
455 TTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACTGTGATGGTTAGTACACGATTTCGGCT
* *
63547 AAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAATTTATAATTT
520 AAAAACTGACCCGAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTATAATTT
** * * * * *
63611 ATTGCCATAAGGATTGACGGGCTTTTCACGCTTCTAATATCATTTTTAAAATTTTTTCCA
585 AACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTT-CAATTTTTTCCG
* *
63671 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGGT-AAAAAAACCAAATCCTTATATCCAA
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA-CAAATCCTTATATCCAA
* * * * *
63735 TATTGCTGAGATTTGATTCGATAAATATAGATATTTCAAAGACTGTTTGTGCCAAAAATAATGCA
65 TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCA
* * *
63800 AAATTGAGCCGGGGATCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTATATGATTTCA
130 AAATTGAGCCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCA
* * * * *
63865 GCTAAAAACTAACTCGAAAACATTTTTCTCAATTTTTTGCTACGATACACAGAAAAAAAATATAA
194 GCTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAA
*
63930 TTCAACGCCAAAAAATATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCA--TTTTTCCGA
259 TTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGA
* * *
63993 ATTAATTTCTAATTAAATCGAAAAAAGATTGAGATGCTCCAAAAAGCAAATCCTTATATCCAATA
324 ATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATA
* *
64058 TTACTGAGATTTGGTTCGATGAATATAGATATTTCAAGTAGTCTTTGTGCCAAAAATCATGCAAA
389 TTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAA
* * * * *
64123 ATTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACGCGATTTCAGC
454 ATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACTGTGATGGTTAGTACACGATTTCGGC
** * * * * **
64188 TAAAATTTTTCAAAAACTGGTCCGTAAA-GTTTTTCCTCAATTTTTTGCAACAGTACTTAGAAAA
519 ---------T-AAAAACTGACCCG-AAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA
* * * * * *
64252 AA--TA-AATTCAACGCCAAAAAAAACTGAAGGG-TTTTCACGCTTCTAATATCGTTGTTCCATT
573 AATGTATAATTTAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCAATT
**
64313 TTTTCTA
637 TTTTCCG
* * * * * ** * *
64320 AATTTATTTCTAA-TATATCGAAATAAGATTCAGATGCTTGTTAAAACAAATCCTTAAATCTAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * * *
64384 -GTGCCTGAGATTTGGTTAGATGAATATAAATATTTC-AAGAAGTCTTTATGCCAAAAACCATGC
66 ATTG-CTGAGATTTGGTTCGATGAATATAGATATTTCAAAG-AGTCTTTGTGCCAAAAATCATGC
* ** * ** * * * *
64447 AAAACTGAGTTGAGGC-CTCAAAACGCGTTTTGAGCC--AAACTCGTTATGGTTAGTTCCCGATT
129 AAAATTGAGCCGGGGCTC-CGGAAC-CGTTTTTAGCCAAAAAC-CGTGATGGTTAGTACACGATT
* * *** * * *
64509 TCGGCT-AAAATTGACCCG--ATTTTTTTTCTCAA-TTTTTGCCACAATACTCATAAAAAATATA
191 TCAGCTAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATA
* * ** * ** *
64570 TAATTGAAC-ACAAAAAAGATT-AAAGGTTTTTCATACTTCTAATATTGTTTTTCCATTTTTTT-
256 TAATTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTC
* * * * * * ** * *
64632 -GAAGTAATTTCTAACTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAGTTTTTAAATCGA
321 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCA
* ** * * * * **
64696 AT-GTGACTG-GTATTTACTTCAATGAAAATAGATAGTTCAAGGAGCCTTTACGCCAAAAATCAT
386 ATATTG-CTGAG-ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCAT
* * ** * *
64759 GTAAAACT--G--A--G-T-C-G-AC-AATTTTT-T------GC--TCAT--TT--T------TT
449 GCAAAATTGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACTGTGATGGTTAGTACACGATT
* * * * * * *
64794 T-TGCT-ACAACTGACCCG--ATTTTTTTCCTCAATTTTTTGCT-ACA-ATTCTCATA-AAAAAT
514 TCGGCTAAAAACTGACCCGAAATTTTTTTTCTCAA-TTTTT--TGCCACAAT-ACACAGAAAAA-
* * ** * * ** * ** **** ** * * *
64852 ATATA-ATTCAACAC-CAAAAAATAAAAG-GGGTTTTTCATGTTTCTAAT-TTCGT--TTTTCCA
574 ATGTATAATTTA-ACGCCAAAAA-GATTGACGGGCTTT--TCACGCTTCTAAT-ATCGTTTTTCA
*
64911 TTTTTTTTCCG
634 -ATTTTTTCCG
* *** *
64922 AATTTAA-TTCTAATTAAATCGAAACAAGATTCAGATGCTTTTAAAAACAAATCCTTAAATCCAA
1 AA-TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAA
* * * * * ** *
64986 TGTGGCTGAAATTTGGTACGATGAATATAGATATTTC-AAGAAGTTTTTACGCAAAAAAAATCAT
65 TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAG-AGTCTTTGTGC--CAAAAATCAT
* * * *** *
65050 GC-AAAGTGAGTCGGGAC-CTCGGAACGCGTTTTTAG-CAAAAAAATTG-T-GATACGTACACGA
127 GCAAAATTGAGCCGGGGCTC-CGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTA-GTACACGA
* * * * *
65110 TTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAA-ATTTTTCCTCAATTTTTTTACAACAATAG
189 TTTCAGC--------T--AAAAACTGACCCGAAAACGTTTTT-CTCAA-TTTTTTGCCACGATA-
* * * * * *
65174 TA-A-AAATATATATATATAATTCAATG-CAAAAAAAAATGAATGGG-TTTTCATGCTTCTAATA
241 CACAGAAA-A-A-ATATATAATTCAACGCCAAAAAAGATTG-ACGGGCTTTTCACGCTTCTAATA
* * * * * * * *
65235 TCGTTTTTCCAATTTTTT-CGAATTTATTTCTTATTAAATTGAAACAAGATTCAAATGGTCGTAA
302 TCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAA
* * * * * * *
65299 AAACAAATCCTTAAATCCAATGTGGCCGAGATTTGGTTAGATGAATGTAGATGTTTCAAGGAGTC
367 AAACAAATCCTTATATCCAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTC
* * * * * * * * *
65364 TTTCTGTCAAATCA-CATGCAAAACTGAGTCAGGGCACCAGAACGCGTTTTTAGCTCAAAAACCG
432 TTTGTGCCAAA-AATCATGCAAAATTGAGCCAGGGCTCCGGAACGCGTTTTTATC-CAAAAACTG
* *
65428 TGA-----CGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCTCTAAATTTTTGCCA
495 TGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCTC-AATTTTTTGCCA
* * * * * *
65488 AAATACTCTGAAAAAATATAT-ATTTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAAT
559 CAATACACAGAAAAAATGTATAATTT-AACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAAT
** *
65552 ATCGTTTTTCTTTTTTTTTTTCG
623 ATCGTTTTTC--AATTTTTTCCG
* * * * * * *
65575 AATTTATTTCCAATTAAATCGAAACCAGATTCAGATGCTCGTAAAAACAAATCGTTATGTCCAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * * * * * *
65640 GTGGCTGACATTTGATTCGATGAATTTAGATATTTCGATGAGTCTTTGCGCCAAAAATCATGCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
* * * * * * * * * *
65705 AACT-AGGTCGGGGCTCTGGAACGCGTTTTTAGCAAAAAATCGAGATGATTAGTATACGACTTCG
131 AATTGA-GCCGGGGCTCCGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCA
* * * * * * *
65769 GTTAAAAACTGACCTGAATAA-TTTTTTCTCAATTTTTTACCACAATACTCATAAAAAAATATAT
194 GCTAAAAACTGACCCGAA-AACGTTTTTCTCAATTTTTTGCCACGATACACA-GAAAAAATATAT
* ** * * * *
65833 AATTCAACGTC--AATTGATTTAAGGGTTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTGT
257 AATTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTT-T
* * * * * * * **
65896 TCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAGTCGTTACATTG
320 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * **
65961 AAT-TTGGCTGGGATTTGGTTCGATGAATATAGATATTTAAAGGAGTGTTTACGCCAAAAATCAT
385 AATATT-GCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCAT
* * * * * *** *
66025 GCAAAACTGTGTCGGGGC-CTCGGAACGTGTTTTTAGAGGGGAAAAAAACTGTGATGGTTAATAC
449 GCAAAATTGAGCCAGGGCTC-CGGAACGCGTTTTT--A---TCCAAAAACTGTGATGGTTAGTAC
* * * *
66089 ACGATTTCGGCTAATTTTTTTTAAAAAAACTAACCCGAAAATTTTTTTCTCAATTTTTTTGGCAT
508 ACGATTTCGGC----------T--AAAAACTGACCCGAAATTTTTTTTCTCAA-TTTTTTGCCAC
** * * * * * * *
66154 AATAGTCAGCAAAAATTATATAATTCAACG-AAAAAAAATTGAAGGGTTTTTCACGCTTCTAATA
560 AATACACAG-AAAAAATGTATAATTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATA
*
66218 -----TTT---TTTTTTCAG
624 TCGTTTTTCAATTTTTTCCG
* * ** * *
66230 AATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTC-AAAAAACAAATTGTTAAATCGAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * ***
66294 -TTGGCTGGGATTTGATTCGATGAATATAGATATTTCAAAGAGTCTTTACACCAAAAATCATGCA
66 ATT-GCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCA
* * * * * * * * *
66358 AAACTGAACCGGGTC-CTCGGAACGCATTTTTAGCTATAAACCGTGA---TAAGTAAACGATTTT
130 AAATTGAGCCGGGGCTC-CGGAAC-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* * * * * ** * *
66419 GGCTAAAAATTTGTAAAAACTAATGCGAAAA-ATCTTTCCTCAATTTTTTTGCCATAATACCCAT
193 AGCTAAAAA-CTG-----AC----CCGAAAACGT-TTTTCTCAA-TTTTTTGCCACGATACACAG
* * ** * * *
66483 AAAAAATATATAATTTAACG-CAAAAAA-ATTGAAGGTTTTTTCACACTTGTAATATCATTTTTC
246 AAAAAATATATAATTCAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTC
* * * * * *
66546 CA-TTTTTTCCTAATTTATTTATAATTATATCAAAACAAGATTTAGATGCTC-ATAAAAACAAAT
311 CATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGA-AAAAACAAAT
* * * * * *
66609 TCTTATATCCAATATGGCTGAGACTTGGTTAGATGAATATTGATATTTCAAGGAGTCTTTTTGCC
375 CCTTATATCCAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCC
* * * ** * * * * *
66674 AAAAATCATGCAAAACTGAGCCGGGGCCCCAAAACACATTTTTAGCCCAAAACCCGTGATGG-T-
440 AAAAATCATGCAAAATTGAGCCAGGGCTCCGGAACGCGTTTTTA-TCCAAAAACTGTGATGGTTA
** ** * *
66737 -T-CACGATTTCGG-------CTGACCTAAAATACTTTTTCTCAATTTTTTGCCACAATACTCAT
504 GTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCTCAATTTTTTGCCACAATACACAG
* * **
66793 AAAAAATATAT-ATTTAACGCCAAAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCC
569 AAAAAATGTATAATTTAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTT-C
** * *
66857 TTTTTTTTTCA
633 AATTTTTTCCG
* * * * * * * * **
66868 AATTAATTTCTAATTAAATTGAAATAAGATTCAGATACTCGTAAAAATAAATACTTAAATTGAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
* * * * * **
66933 GTGGTTGTGGTTTTATTCGATGAATATAGATATTTCAA
66 ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAA
66971 GCCTTTCAAG
Statistics
Matches: 8358, Mismatches: 1056, Indels: 629
0.83 0.11 0.06
Matches are distributed among these distances:
596 1 0.00
597 11 0.00
598 12 0.00
599 14 0.00
600 8 0.00
601 17 0.00
602 21 0.00
603 110 0.01
604 28 0.00
605 13 0.00
610 2 0.00
611 4 0.00
614 11 0.00
615 5 0.00
616 6 0.00
617 4 0.00
618 14 0.00
619 3 0.00
620 21 0.00
621 35 0.00
622 103 0.01
623 4 0.00
624 1 0.00
626 1 0.00
628 32 0.00
629 45 0.01
630 23 0.00
631 21 0.00
632 5 0.00
633 66 0.01
634 70 0.01
635 6 0.00
636 157 0.02
637 151 0.02
638 132 0.02
639 193 0.02
640 590 0.07
641 839 0.10
642 1036 0.12
643 927 0.11
644 606 0.07
645 477 0.06
646 966 0.12
647 321 0.04
648 217 0.03
649 171 0.02
650 59 0.01
651 58 0.01
652 107 0.01
653 137 0.02
654 134 0.02
655 48 0.01
656 1 0.00
657 2 0.00
658 128 0.02
659 7 0.00
660 7 0.00
661 64 0.01
662 18 0.00
663 1 0.00
664 2 0.00
665 69 0.01
666 13 0.00
667 3 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34
Consensus pattern (643 bp):
AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAAT
ATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAAATCATGCAA
AATTGAGCCGGGGCTCCGGAACCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGC
TAAAAACTGACCCGAAAACGTTTTTCTCAATTTTTTGCCACGATACACAGAAAAAATATATAATT
CAACGCCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAAT
TAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATT
GCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAAT
TGAGCCAGGGCTCCGGAACGCGTTTTTATCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTA
AAAACTGACCCGAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATGTATAATTTA
ACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTCCG
Found at i:68494 original size:2 final size:2
Alignment explanation
Indices: 68487--68523 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
68477 TCTTTTAAAC
68487 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68524 CATAAAAGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:73060 original size:65 final size:65
Alignment explanation
Indices: 72979--73108 Score: 242
Period size: 65 Copynumber: 2.0 Consensus size: 65
72969 ATATAAGTCC
72979 CCTTTCTAAACCCAATGCATATTTAAAAGTTATTTACAAAACTAACCTTGAAAGTGGTAGAATAG
1 CCTTTCTAAACCCAATGCATATTTAAAAGTTATTTACAAAACTAACCTTGAAAGTGGTAGAATAG
* *
73044 CCTTTCTAAACCCAATGCATATTTAAAAGTTATTTCCAAAACTAGCCTTGAAAGTGGTAGAATAG
1 CCTTTCTAAACCCAATGCATATTTAAAAGTTATTTACAAAACTAACCTTGAAAGTGGTAGAATAG
73109 TTAAGAAATG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (65 bp):
CCTTTCTAAACCCAATGCATATTTAAAAGTTATTTACAAAACTAACCTTGAAAGTGGTAGAATAG
Found at i:85271 original size:2 final size:2
Alignment explanation
Indices: 85264--85291 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
85254 ATTGGAAAGA
85264 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85292 GACACAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86048 original size:14 final size:14
Alignment explanation
Indices: 86029--86058 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86019 CCATTTTATC
86029 TATCTATACATATA
1 TATCTATACATATA
*
86043 TATCTATATATATA
1 TATCTATACATATA
86057 TA
1 TA
86059 ATAATTTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (14 bp):
TATCTATACATATA
Found at i:89058 original size:31 final size:31
Alignment explanation
Indices: 89017--89089 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
89007 GTACAATGAG
* * *
89017 GACTCAATTGACACAATCTTATGAATACATT
1 GACTAAATTGACACAAGCTTATGAATACATA
* *
89048 GACTAAATTGACTCAAGCTTGTGAATACATA
1 GACTAAATTGACACAAGCTTATGAATACATA
*
89079 GACAAAATTGA
1 GACTAAATTGA
89090 TCATTTTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (31 bp):
GACTAAATTGACACAAGCTTATGAATACATA
Found at i:89696 original size:2 final size:2
Alignment explanation
Indices: 89689--89721 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
89679 AATTCTAGAT
89689 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
89722 TGTTTTGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:92224 original size:19 final size:20
Alignment explanation
Indices: 92178--92225 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
92168 TGTGGCACGC
*
92178 CACATGTACCAAAAAGTCGTGC
1 CACATGTACCAAAAA--CGTGA
92200 CACATGTACCAAAAA-GTGA
1 CACATGTACCAAAAACGTGA
92219 CACATGT
1 CACATGT
92226 CACGCCACGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 10 0.40
22 15 0.60
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CACATGTACCAAAAACGTGA
Found at i:92230 original size:53 final size:53
Alignment explanation
Indices: 92145--92247 Score: 161
Period size: 53 Copynumber: 1.9 Consensus size: 53
92135 GACGTGGCAC
* **
92145 GCCACGTGTACCAAAAAGTGACATGTGGCACGCCACATGTACCAAAAAGTCGT
1 GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGTCGT
* *
92198 GCCACATGTACCAAAAAGTGACACATGTCACGCCACGTGTACCAAAAAGT
1 GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGT
92248 GACATGTGGC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.17
Consensus pattern (53 bp):
GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGTCGT
Found at i:92264 original size:31 final size:31
Alignment explanation
Indices: 92197--92294 Score: 117
Period size: 31 Copynumber: 3.2 Consensus size: 31
92187 CAAAAAGTCG
* *
92197 TGCCACATGTACCAAAAAGTGACACATGTCA
1 TGCCACATGTACCAAAAAGTGACACGTGGCA
* * *
92228 CGCCACGTGTACCAAAAAGTGACATGTGGCA
1 TGCCACATGTACCAAAAAGTGACACGTGGCA
** *
92259 TGCCACATGTTTCAAAAA-TGGCACGTGGCA
1 TGCCACATGTACCAAAAAGTGACACGTGGCA
92289 TGCCAC
1 TGCCAC
92295 GTGCACAAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
30 16 0.29
31 40 0.71
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (31 bp):
TGCCACATGTACCAAAAAGTGACACGTGGCA
Found at i:93453 original size:15 final size:16
Alignment explanation
Indices: 93432--93476 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
93422 TCGCCCTATT
*
93432 TTTTACACTTTTGCCC
1 TTTTACACTTTTACCC
93448 -TTTACA-TTTTACCC
1 TTTTACACTTTTACCC
93462 TTTTTACACTTTTAC
1 -TTTTACACTTTTAC
93477 ACTAAGCCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 7 0.28
15 6 0.24
16 6 0.24
17 6 0.24
ACGTcount: A:0.18, C:0.27, G:0.02, T:0.53
Consensus pattern (16 bp):
TTTTACACTTTTACCC
Found at i:97812 original size:112 final size:112
Alignment explanation
Indices: 97674--97898 Score: 450
Period size: 112 Copynumber: 2.0 Consensus size: 112
97664 TCTGCAATGG
97674 TATGTTACTGCTTCAAACAGTGGTTAATGAATCTGAGATTGACTGATTATGAATCTTCATTTCAG
1 TATGTTACTGCTTCAAACAGTGGTTAATGAATCTGAGATTGACTGATTATGAATCTTCATTTCAG
97739 TTAAGCAATGAACACTTTAAGCCTGGAGTTTCATGACATAATTTACT
66 TTAAGCAATGAACACTTTAAGCCTGGAGTTTCATGACATAATTTACT
97786 TATGTTACTGCTTCAAACAGTGGTTAATGAATCTGAGATTGACTGATTATGAATCTTCATTTCAG
1 TATGTTACTGCTTCAAACAGTGGTTAATGAATCTGAGATTGACTGATTATGAATCTTCATTTCAG
97851 TTAAGCAATGAACACTTTAAGCCTGGAGTTTCATGACATAATTTACT
66 TTAAGCAATGAACACTTTAAGCCTGGAGTTTCATGACATAATTTACT
97898 T
1 T
97899 TTCTTAGTTT
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 113 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (112 bp):
TATGTTACTGCTTCAAACAGTGGTTAATGAATCTGAGATTGACTGATTATGAATCTTCATTTCAG
TTAAGCAATGAACACTTTAAGCCTGGAGTTTCATGACATAATTTACT
Found at i:108148 original size:56 final size:56
Alignment explanation
Indices: 108062--108173 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
108052 ACCGCAATTA
108062 ACTTGCCATTGATTATAAATGTTTCCAAAACACACTTTGATTTGCCTAACTAAAGC
1 ACTTGCCATTGATTATAAATGTTTCCAAAACACACTTTGATTTGCCTAACTAAAGC
108118 ACTTGCCATTGATTATAAATGTTTCCAAAACACACTTTGATTTGCCTAACTAAAGC
1 ACTTGCCATTGATTATAAATGTTTCCAAAACACACTTTGATTTGCCTAACTAAAGC
108174 GATTTTGGAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (56 bp):
ACTTGCCATTGATTATAAATGTTTCCAAAACACACTTTGATTTGCCTAACTAAAGC
Found at i:108440 original size:15 final size:16
Alignment explanation
Indices: 108414--108444 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
108404 ACCAACATAC
108414 TAAATATACAAAGAAA
1 TAAATATACAAAGAAA
108430 TAAAT-TACAAAGAAA
1 TAAATATACAAAGAAA
108445 AATCACATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.19
Consensus pattern (16 bp):
TAAATATACAAAGAAA
Found at i:149126 original size:14 final size:15
Alignment explanation
Indices: 149092--149130 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
149082 ATACAATCTA
149092 AAAACAAAACCAATAG
1 AAAA-AAAACCAATAG
*
149108 AAAAAAAACTAATAG
1 AAAAAAAACCAATAG
149123 AAAAAAAA
1 AAAAAAAA
149131 AACTTTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.77, C:0.10, G:0.05, T:0.08
Consensus pattern (15 bp):
AAAAAAAACCAATAG
Found at i:149127 original size:16 final size:16
Alignment explanation
Indices: 149091--149131 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
149081 AATACAATCT
149091 AAAAACAAAACCAATAG
1 AAAAA-AAAACCAATAG
*
149108 -AAAAAAAACTAATAG
1 AAAAAAAAACCAATAG
149123 AAAAAAAAA
1 AAAAAAAAA
149132 ACTTTTCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.78, C:0.10, G:0.05, T:0.07
Consensus pattern (16 bp):
AAAAAAAAACCAATAG
Found at i:149132 original size:17 final size:17
Alignment explanation
Indices: 149091--149134 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 17
149081 AATACAATCT
* *
149091 AAAAACAAAACCAATAG
1 AAAAAAAAAACTAATAG
149108 --AAAAAAAACTAATAG
1 AAAAAAAAAACTAATAG
149123 AAAAAAAAAACT
1 AAAAAAAAAACT
149135 TTTCAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 13 0.57
17 10 0.43
ACGTcount: A:0.75, C:0.11, G:0.05, T:0.09
Consensus pattern (17 bp):
AAAAAAAAAACTAATAG
Found at i:150143 original size:17 final size:17
Alignment explanation
Indices: 150100--150145 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 17
150090 TTGTTTGGTT
*
150100 TGAGTAGTTTGAAGGGG
1 TGAGGAGTTTGAAGGGG
150117 TGGAGAGGAGTTTGAAGGGG
1 T---GAGGAGTTTGAAGGGG
150137 TGAGGAGTT
1 TGAGGAGTT
150146 GTTTGGTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 9 0.36
20 16 0.64
ACGTcount: A:0.24, C:0.00, G:0.50, T:0.26
Consensus pattern (17 bp):
TGAGGAGTTTGAAGGGG
Found at i:150150 original size:20 final size:20
Alignment explanation
Indices: 150101--150138 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
150091 TGTTTGGTTT
150101 GAGTAGTTTGAAGGGGTGGA
1 GAGTAGTTTGAAGGGGTGGA
*
150121 GAGGAGTTTGAAGGGGTG
1 GAGTAGTTTGAAGGGGTG
150139 AGGAGTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.53, T:0.24
Consensus pattern (20 bp):
GAGTAGTTTGAAGGGGTGGA
Found at i:150611 original size:15 final size:15
Alignment explanation
Indices: 150591--150628 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
150581 TTTTTATACA
*
150591 ACCCCTCCCTACCCC
1 ACCCCTCCCCACCCC
150606 ACCCCTCCCCACCCC
1 ACCCCTCCCCACCCC
150621 ACCCCTCC
1 ACCCCTCC
150629 ACCATTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.13, C:0.76, G:0.00, T:0.11
Consensus pattern (15 bp):
ACCCCTCCCCACCCC
Found at i:152169 original size:326 final size:321
Alignment explanation
Indices: 151444--152266 Score: 785
Period size: 326 Copynumber: 2.5 Consensus size: 321
151434 TAAGCAAAAT
* * *
151444 CATATTTCAAAGAGTCCTTGCGCCAAAAATCATGCAAAATTGATCCAGGTCTCCGGAACGCGTTT
1 CATATTTCAAAGAGTCTTTGCTCCAAAAATCATGCAAAATTGAACCAGGTCTCC-GAACGCGTTT
* * *
151509 TTAGCCAAAAACTGTGATGATTAGTACAAGATGTCGGCTTAAAATTTGCAAAAACTGACCCGAAA
65 TTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGC----AA--T--AAAAACTGACCCGAAA
* * * * * *
151574 ATTTTCTTTCTTTATTTTTTGCCACAATACTCAGAAAAAGTTATGTAATTCAACCCCAAAAAATT
122 A-TTTCTTTCCTGATTTTTTGCCACAATACTCAGAAAAAGATATATAATTAAACCCAAAAAAATT
* *
151639 GAAGGGTTTTTCACGCTTATAATATTTCTTTTCCATTTTTTCCGAATTTATTTCTAATTAAATCG
186 GAAGGGCTTTTCACGCTTATAATATTTCTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCG
* *
151704 AAACCAGATTAAGATGATCATTAAATAAATCCTTAAATGCACAATGGCTGAGATTTGGTTAGATG
251 AAACAAGATTAAGATGATCATTAAACAAATCCTTAAATGCACAATGGCTGAGATTTGGTTAGATG
151769 AATAAA
316 AATAAA
* * * * * * * *
151775 GATATTTCAAGGAGTCTTT-CTGCCAAAAATCATACAAAACTGAGCCGGGGAC-CCGAAACGCAT
1 CATATTTCAAAGAGTCTTTGCT-CCAAAAATCATGCAAAATTGAACC-AGGTCTCCG-AACGCGT
* * *
151838 TTTTAGCCTAAAAACCGTGATGGTTGGTACACGATTTTGGC-A-AAAAACTGACCCGGAAAA-TT
63 TTTTAGCC-AAAAACTGTGATGGTTAGTACACGATTTCGGCAATAAAAACTGACCC-GAAAATTT
*
151900 -TTTCCTGACCTTTTTTAG-CACAATACTC-GTAAAAA-ATATATAATTAAACGCAAAAAAAGGT
126 CTTTCCTGA--TTTTTT-GCCACAATACTCAG-AAAAAGATATATAATTAAACCCAAAAAAA--T
* *
151961 TGACGGGCTTTTCACGCTTCTAATATCGTT-TTTT-CATTTTTTTTCCGAATTAATTTCTAATTA
185 TGAAGGGCTTTTCACGCTTATAATAT--TTCTTTTCCA--TTTTTTCCGAATTAATTTCTAATTA
* * * ** *
152024 AATCGAAACAAGTTTCAGATGCTCA-TAAACGCAAATCCTTATCT-C-CAATGTGGCTGATATTT
246 AATCGAAACAAGATTAAGATGATCATTAAA--CAAATCCTTAAATGCACAA--TGGCTGAGATTT
* *
152086 GGTTCGATGAATATA
307 GGTTAGATGAATAAA
152101 CATATTTCAAAGAGTCTTTGCTCCAAAAATCATGCAAAATTGAACCAGGTCTCCAGAACGCGTTT
1 CATATTTCAAAGAGTCTTTGCTCCAAAAATCATGCAAAATTGAACCAGGTCTCC-GAACGCGTTT
* *
152166 TTAGCCAACAACTGTGATGATGATTAGTACACGATTTCGACTAAAATTTTGCAAAAACTGACCCG
65 TTAGCCAAAAACTGTGATG--G-TTAGTACACGATTTCGGC---AA---T--AAAAACTGACCCG
*
152231 AAAATTT-TTTCCTCTATTTTTTTGCCACAATACTCA
119 AAAATTTCTTTCCT-GA-TTTTTTGCCACAATACTCA
152267 AAATTCAGAT
Statistics
Matches: 401, Mismatches: 52, Indels: 70
0.77 0.10 0.13
Matches are distributed among these distances:
320 6 0.01
321 21 0.05
322 33 0.08
323 32 0.08
324 11 0.03
325 62 0.15
326 88 0.22
327 5 0.01
328 15 0.04
330 2 0.00
331 53 0.13
332 30 0.07
337 6 0.01
338 36 0.09
339 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.33
Consensus pattern (321 bp):
CATATTTCAAAGAGTCTTTGCTCCAAAAATCATGCAAAATTGAACCAGGTCTCCGAACGCGTTTT
TAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCAATAAAAACTGACCCGAAAATTTCTTTC
CTGATTTTTTGCCACAATACTCAGAAAAAGATATATAATTAAACCCAAAAAAATTGAAGGGCTTT
TCACGCTTATAATATTTCTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATT
AAGATGATCATTAAACAAATCCTTAAATGCACAATGGCTGAGATTTGGTTAGATGAATAAA
Found at i:152813 original size:560 final size:559
Alignment explanation
Indices: 151751--152829 Score: 1476
Period size: 560 Copynumber: 1.9 Consensus size: 559
151741 TGCACAATGG
* * *
151751 CTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATACAAAACT
1 CTGAGATTTGGTTAGATGAATAAAGATATTTCAAAGAGTCTTTCAGCAAAAAATCATACAAAACT
* * **
151816 GAGCCGGGGACCCGAAACGCATTTTTAGCCTAAAAACCGTGATGGTTGGTACACGATTTTGGCAA
66 GAGCCGGGGACCCGAAACGCATTTTTAGCCTAAAAACCGTGATGCTTAGTACACGATTTACGCAA
* ** * ** *
151881 AAAACTGACCCGGAAAATTTTTCCTGACCTTTTTTAGCACAATACTCGTAAAAAATATATAATTA
131 AAAACAGACCCAAAAAAATTTTCCTGAAATTTTTTAGCACAATACTCATAAAAAATATATAATTA
* * * *
151946 AACGCAAAAAAAGGTTGACGGGCTTTTCACGCTTCTAATATCGTTTTTTCATTTTTTTTCCGAAT
196 AACGCAAAAAAAGATTAACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATATTTTTTCCGAAT
152011 TAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCCAATGTG
261 TAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCCAATGTG
* * * *
152076 GCTGATATTTGGTTCGATGAATATACATATTTCAAAGAGTCTTTGCTCCAAAAATCATGCAAAAT
326 GCTGAGACTTGGTTCGATGAATATACATATTCCAAAGAGTCTTTGCTACAAAAATCATGCAAAAT
* * * * * *
152141 TGAACCAGGTCTCCAGAACGCGTTTTTAGCCAACAACTGTGATGATGATTAGTACACGATTTCGA
391 TGAACCAGGGCTCCAGAACGCGTTTTTAGCAAAAAACTGTAATGATGACTAGTACACGATTTCAA
** *
152206 CTAAAATTTTGCAAAAACTGACCCGAAAATTTTTTCCTCTATTTTTTTGCCACAATACTCAAAAT
456 CTAAAATTTAACAAAAACTGACCCGAAAATTTTTTCCTCTATTTTTTTGCCACAATACTAAAAAT
152271 TCAGATGCTCGTAAAATCAAATCCTTGAATCCAACGTGT
521 TCAGATGCTCGTAAAATCAAATCCTTGAATCCAACGTGT
* * * *
152310 CTGATATTTGGTTAGATGAATATAGATATTTCAAAGAGTTTTTCAGCAAAAAATCATGCAAAACT
1 CTGAGATTTGGTTAGATGAATAAAGATATTTCAAAGAGTCTTTCAGCAAAAAATCATACAAAACT
* * * * * * *
152375 GAGTCGGGGCCCCGAAACTCGTTTTTTAGCCGT-AAAACTGTGATGCTTAGTATACGATTTACGT
66 GAGCCGGGGACCCGAAACGC-ATTTTTAGCC-TAAAAACCGTGATGCTTAGTACACGATTTACGC
*
152439 TAAAAACAGACCCAAAAAAAATTTTCCT-AAATTTTTTA-CGACAATACTCATAAATAATATATA
129 AAAAAACAGACCC-AAAAAAATTTTCCTGAAATTTTTTAGC-ACAATACTCATAAA-AA-ATATA
* * * * *
152502 TAATTCAATG-ACAAGAAGATTAACGGGCTTTTCACGCTTTTAATATCGTTTTTCCA-ATTTTTT
190 TAATTAAACGCAAAAAAAGATTAACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATATTTTTT
152565 CCGAATTAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCC
255 CCGAATTAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCC
* *
152630 AATGTGGCTGAGACTTGGTTCGATGAATATAGATATTCCAAAGAGTCTTTG-TGACAGAAATCAT
320 AATGTGGCTGAGACTTGGTTCGATGAATATACATATTCCAAAGAGTCTTTGCT-ACAAAAATCAT
** * * *
152694 GCAAAATTGAGTCGGGGCTCCAGAACGCGTTTTTAGTAAAAAA-TCGTAAT-A-G-CTAGTACAT
384 GCAAAATTGAACCAGGGCTCCAGAACGCGTTTTTAGCAAAAAACT-GTAATGATGACTAGTACAC
* *
152755 GATTTCAACTAAAATTTAACAAAAACTGATCCGAAAATTTTTTTCCTCTATTTTTTTTTGCTACA
448 GATTTCAACTAAAATTTAACAAAAACTGACCCGAAAA-TTTTTTCCTCTA--TTTTTTTGCCACA
152820 ATACTAAAAA
510 ATACTAAAAA
152830 ATATATATAT
Statistics
Matches: 452, Mismatches: 57, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
557 40 0.09
558 13 0.03
559 79 0.17
560 253 0.56
561 54 0.12
562 13 0.03
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (559 bp):
CTGAGATTTGGTTAGATGAATAAAGATATTTCAAAGAGTCTTTCAGCAAAAAATCATACAAAACT
GAGCCGGGGACCCGAAACGCATTTTTAGCCTAAAAACCGTGATGCTTAGTACACGATTTACGCAA
AAAACAGACCCAAAAAAATTTTCCTGAAATTTTTTAGCACAATACTCATAAAAAATATATAATTA
AACGCAAAAAAAGATTAACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATATTTTTTCCGAAT
TAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCCAATGTG
GCTGAGACTTGGTTCGATGAATATACATATTCCAAAGAGTCTTTGCTACAAAAATCATGCAAAAT
TGAACCAGGGCTCCAGAACGCGTTTTTAGCAAAAAACTGTAATGATGACTAGTACACGATTTCAA
CTAAAATTTAACAAAAACTGACCCGAAAATTTTTTCCTCTATTTTTTTGCCACAATACTAAAAAT
TCAGATGCTCGTAAAATCAAATCCTTGAATCCAACGTGT
Found at i:154393 original size:655 final size:655
Alignment explanation
Indices: 152310--154867 Score: 3507
Period size: 655 Copynumber: 3.9 Consensus size: 655
152300 TCCAACGTGT
* * * * * * *
152310 CTGATATTTGGTTAGATGAATATAGATATTTCAAAGAGTTTTTCAGCAAAAAATCATGCAAAACT
1 CTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATACAAAACT
* * * * * * *
152375 GAGTCGGGGCCCCGAAACTCGTTTTTTAGCCGT-AAAACTGTGATGCTTAGTATACGATTTAC-G
66 GAGTCGGGGACCCGAAACGC-ATTTTTAGCC-TAAAAACCGTCATGGTTAGTACACGATTT-CGG
** * * * * *
152438 TTAAAAACAGACCCAAAAAAAATTTTCCTAAATTTTTTACGACAATACTCATAAATAATATATAT
128 CCAAAAACTGACCC--GAAAAATTTTTCTGAATTTTTTACCACAATACTCATAAA-AA-ATATAT
* * * * * * * *
152503 AATTCAATGACAAGAAGATTAACGGGCTTTTCACGCTTTTAATATCGTTTTTCCA-ATTTTTTCC
189 AATTCAACGCCAAAAAGGTTGACGGGCTTTTCACGCTTCTAATATCGTTTTTTCATTTTTTTTCC
152567 GAATTAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCCAA
254 GAATTAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCCAA
* * * * * *
152632 TGTGGCTGAGACTTGGTTCGATGAATATAGATATTCCAAAGAGTCTTTGTGACAGAAATCATGCA
319 TGTGGCTGAGATTTGGTTCGATGAATACAGATATTTCAAAGAGTCTTTGCGCCAAAAATCATGCA
** * * * ** * *
152697 AAATTGAGTCGGGGCTCCAGAACGCGTTTTTAGTAAAAAATCGTA--AT-AGCTAGTACATGATT
384 AAATTGAACCAGGTCTCCGGAACGCGTTTTTAGCCAAAAA-CGTATGATGA-TTAGTACACGATT
* ** * * * *
152759 TCAACTAAAATTTAACAAAAACTGATCCGAAAATTTTTTTCCTCTATTTTTTTTTGCTACAATAC
447 TCGACTAAAATTTTGCAAAAACTGACCCGAAAATTTTCTT--TCT-TTATTTTTTGCCACAATAC
* * * * * **
152824 TAAAAAATATATATATATATATAATTCAA-CGCAAAAAAATTTTGAATGAATTTTCACGCTTCTA
509 T-CAGAA-A-A-A-GT-TATGTAATTCAACCCCAAAAAAA--TTGAA-GGGTTTTCACGCTTCTA
* * * * *
152888 AAATTTTTTTTCCATTTTTTCCCAATTTCTTTCTAACTAAATCGAAACCAGATTAAGATGATCAT
565 ATATTTCTTTTCCATTTTTTCCGAATTTATTTCTAATTAAATCGAAACCAGATTAAGATGATCAT
* * * *
152953 AAAAAAAATCCTTAAATGCACAGTTG
630 TAAATAAATCCTTAAATGCACAATGG
* *
152979 CTGAGATTTGATTAGATAAATATAA-ATATTTCAAGGAGTCTTTCTGCCAAAAATCATACAAAAC
1 CTGAGATTTGGTTAGATGAATA-AAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATACAAAAC
* *
153043 TGAGTCGGGGACCCGAAACGCATTTTTCGCC-AAAAATCGTCATGGTTAGTACACGATTTTCTGG
65 TGAGTCGGGGACCCGAAACGCATTTTTAGCCTAAAAACCGTCATGGTTAGTACACGA-TTTC-GG
153107 CCAAAAAACTGACCCGAAAAATTTTGTCTGAAATTTTTTACCACAATACTCAT-AAAAATATATA
128 CC-AAAAACTGACCCGAAAAATTTT-TCTG-AATTTTTTACCACAATACTCATAAAAAATATATA
*
153171 ATTCAACGCCAAAAAGGTTGACGGGCTTTTCACACTTCTAATATCGTTTTTTCATTTTTTTTCCG
190 ATTCAACGCCAAAAAGGTTGACGGGCTTTTCACGCTTCTAATATCGTTTTTTCATTTTTTTTCCG
***
153236 AATTAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAATAAAAATCCTTATCTCCAAT
255 AATTAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCCAAT
* *
153301 GTGGCTGAGATTTGGTTCGATGAATACATATATTTCAAAGAGTCTTTGCTCCAAAAATCATGCAA
320 GTGGCTGAGATTTGGTTCGATGAATACAGATATTTCAAAGAGTCTTTGCGCCAAAAATCATGCAA
* *
153366 AATTGAACCAGGTCTCCGGAACGCGTGTTTAGCCAAAAAC-TGTGATGATTAGTACACGATTTCG
385 AATTGAACCAGGTCTCCGGAACGCGTTTTTAGCCAAAAACGTATGATGATTAGTACACGATTTCG
* *
153430 GCTTAAAA-TTTGCAAAAACTGACCCGAAAATTTTCCTTCTTTATTTTTTGCCACAATACTCAGA
450 AC-TAAAATTTTGCAAAAACTGACCCGAAAATTTTCTTTCTTTATTTTTTGCCACAATACTCAGA
* * *
153494 AAAAGTTATGTAACTCAACCTC-AAAAAATTGAAGGGTTTTTCACGCTTCTAATATTTCTTTTGC
514 AAAAGTTATGTAATTCAACCCCAAAAAAATTGAAGGG-TTTTCACGCTTCTAATATTTCTTTTCC
153558 ATTTTTTCCGAATTTATTTCTAATTAAATCGAAACCAGATTAAGATGATCATTAAATAAATCCTT
578 ATTTTTTCCGAATTTATTTCTAATTAAATCGAAACCAGATTAAGATGATCATTAAATAAATCCTT
153623 AAATGCACAATGG
643 AAATGCACAATGG
153636 CTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATACAAAACT
1 CTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATACAAAACT
* * * * *
153701 GAGCCGGGGACCTGAAACGCATTTTTAGCTTAAAAACCGTGATGGTTGGTACACGATTTCGGCCA
66 GAGTCGGGGACCCGAAACGCATTTTTAGCCTAAAAACCGTCATGGTTAGTACACGATTTCGGCCA
* *
153766 AAAACTGACCCGAAAAATTTTTCTGAATTTTTTTCCACAATGCTCATAAAAAATATATAATTCAA
131 AAAACTGACCCGAAAAATTTTTCTGAATTTTTTACCACAATACTCATAAAAAATATATAATTCAA
*
153831 CGCCAAAAAGGTTGACGGGCTTTTCACGCTTCTAATATCATTTTTTTCA-TTTTTTTCCGAATTA
196 CGCCAAAAAGGTTGACGGGCTTTTCACGCTTCTAATATC-GTTTTTTCATTTTTTTTCCGAATTA
* *
153895 ATTTCTAGTTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATTCTTATCTCCAATGTGGC
260 ATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCCAATGTGGC
* *
153960 TGACATTTGGTTTGATGAATACAGATATTTCAAAGAGTCTTTGCGCCAAAAATCATGCAAAATTG
325 TGAGATTTGGTTCGATGAATACAGATATTTCAAAGAGTCTTTGCGCCAAAAATCATGCAAAATTG
** * *
154025 AGTCGGGTCTCCGGAACGCGTTTTTAGCCAAAAAC-TATGATGATTAGTACACGATTTCGACTTA
390 AACCAGGTCTCCGGAACGCGTTTTTAGCCAAAAACGTATGATGATTAGTACACGATTTCGACTAA
* *
154089 AATTTTGCAAAAACTGACTCGAAAATTTTCTTTCTTTATTTTTTGCCAAAATACTCAGAAAAAGT
455 AATTTTGCAAAAACTGACCCGAAAATTTTCTTTCTTTATTTTTTGCCACAATACTCAGAAAAAGT
*
154154 TATGTAATTCAACCCCAAAAAAATTGAAGGGTTTTACACGATTCTAATATTTCTTTTCCATTTTT
520 TATGTAATTCAACCCCAAAAAAATTGAAGGGTTTT-CACGCTTCTAATATTTCTTTTCCATTTTT
154219 TCCGAATTTATTTCTAATTAAATCGAAACCAGATTAAGATGATCATTAAATAAATCCTTAAATGC
584 TCCGAATTTATTTCTAATTAAATCGAAACCAGATTAAGATGATCATTAAATAAATCCTTAAATGC
154284 ACAATGG
649 ACAATGG
* *
154291 CTGAGATTTGGTTAGATGAATAAAGATATTTTAAGGAGTCTTTCTGCCAAAAATCATACAAAATT
1 CTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATACAAAACT
* *
154356 GAGTCGGGGACCCGAAACGCATTTTTCGCCTAAAAACCGTCATGGTTGGTACACGATTTCGGCCA
66 GAGTCGGGGACCCGAAACGCATTTTTAGCCTAAAAACCGTCATGGTTAGTACACGATTTCGGCCA
* * *
154421 AAAACTGACCCGAAAATTTTTTTCTGAATTTTTTACCACATTACTCATAGAAAATATATAATTCA
131 AAAACTGACCCGAAAA-ATTTTTCTGAATTTTTTACCACAATACTCATAAAAAATATATAATTCA
*
154486 ACGCCAAAAAGGTTGACGGGCTTTTCACGCTTCTAATATCGTTTTTTCATTTTTTTTCCAAATTA
195 ACGCCAAAAAGGTTGACGGGCTTTTCACGCTTCTAATATCGTTTTTTCATTTTTTTTCCGAATTA
*
154551 ATTTCTAATTAAATCGAAACAAGTTTCAAATGCTCATAAACGCAAATCCTTA-CTCCAATGTGGC
260 ATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCCAATGTGGC
* * *
154615 TGATATTTGGTTCGATGAATACACATATTTCAAAGAGTCTTTGCTCCAAAAATCATGCAAAATTG
325 TGAGATTTGGTTCGATGAATACAGATATTTCAAAGAGTCTTTGCGCCAAAAATCATGCAAAATTG
*
154680 AACCAGGTCTTCGGAACGCGTTTTTAGCCAAAAACTGTGATGATGATTAGTACACGATTTCGACT
390 AACCAGGTCTCCGGAACGCGTTTTTAGCCAAAAAC-GT-ATGATGATTAGTACACGATTTCGACT
*
154745 AAAATTTTGCAAAAACTGACCCGAAAATTTT-TTTCCTCTATTTTTTTGCCACAATACTCA-ATA
453 AAAATTTTGCAAAAACTGACCCGAAAATTTTCTTT-CTTTA-TTTTTTGCCACAATACTCAGA-A
* * ** **
154808 TATA-TATATATAATTCAACGCAAAAAAAAATTGAATGAATTTTCACGCTTCTAATATTTC
515 -AAAGT-TATGTAATTCAAC-CCCAAAAAAATTGAA-GGGTTTTCACGCTTCTAATATTTC
154868 CTTTATTGAA
Statistics
Matches: 1700, Mismatches: 155, Indels: 76
0.88 0.08 0.04
Matches are distributed among these distances:
653 24 0.01
654 327 0.19
655 394 0.23
656 153 0.09
657 194 0.11
658 82 0.05
659 36 0.02
660 17 0.01
661 30 0.02
662 6 0.00
663 1 0.00
664 3 0.00
665 18 0.01
666 4 0.00
667 74 0.04
668 221 0.13
669 83 0.05
670 33 0.02
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (655 bp):
CTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATACAAAACT
GAGTCGGGGACCCGAAACGCATTTTTAGCCTAAAAACCGTCATGGTTAGTACACGATTTCGGCCA
AAAACTGACCCGAAAAATTTTTCTGAATTTTTTACCACAATACTCATAAAAAATATATAATTCAA
CGCCAAAAAGGTTGACGGGCTTTTCACGCTTCTAATATCGTTTTTTCATTTTTTTTCCGAATTAA
TTTCTAATTAAATCGAAACAAGTTTCAGATGCTCATAAACGCAAATCCTTATCTCCAATGTGGCT
GAGATTTGGTTCGATGAATACAGATATTTCAAAGAGTCTTTGCGCCAAAAATCATGCAAAATTGA
ACCAGGTCTCCGGAACGCGTTTTTAGCCAAAAACGTATGATGATTAGTACACGATTTCGACTAAA
ATTTTGCAAAAACTGACCCGAAAATTTTCTTTCTTTATTTTTTGCCACAATACTCAGAAAAAGTT
ATGTAATTCAACCCCAAAAAAATTGAAGGGTTTTCACGCTTCTAATATTTCTTTTCCATTTTTTC
CGAATTTATTTCTAATTAAATCGAAACCAGATTAAGATGATCATTAAATAAATCCTTAAATGCAC
AATGG
Done.