Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014552.1 Corchorus capsularis cultivar CVL-1 contig14573, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  230014

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--1602
311
4.9
324
75
12
1065
34
17
14
34
1.90
2870--2900
16
1.9
16
93
0
53
9
19
6
64
1.45
8240--8277
19
2.0
20
89
5
60
15
26
13
44
1.83
30933--31286
183
1.9
184
94
0
629
42
17
11
28
1.84
38542--38615
28
2.6
28
71
2
76
51
16
12
20
1.76
42696--42725
9
3.3
9
100
0
60
20
60
0
20
1.37
43621--43647
7
3.9
7
100
0
54
70
0
14
14
1.17
44783--44808
3
8.7
3
100
0
52
69
0
0
30
0.89
48865--48926
4
13.8
5
91
5
66
1
16
0
82
0.75
57065--57094
11
2.6
11
94
5
51
86
0
13
0
0.57
72884--72923
6
6.7
6
85
0
53
17
30
0
52
1.45
81428--81458
2
15.5
2
100
0
62
48
0
0
51
1.00
81751--81826
31
2.5
31
82
4
73
15
28
21
34
1.94
89937--90009
29
2.5
28
76
8
83
19
30
13
36
1.90
92960--93018
29
2.0
29
96
0
109
45
8
20
25
1.79
121251--121309
29
2.0
29
100
0
118
45
10
13
30
1.76
136013--136196
92
2.0
92
100
0
368
22
15
27
34
1.94
139489--139513
3
8.3
3
100
0
50
64
0
0
36
0.94
141487--141524
16
2.4
16
100
0
76
5
7
39
47
1.55
142309--142353
16
2.9
15
80
9
54
2
11
42
44
1.52
154192--154338
39
3.9
37
71
12
122
49
0
46
2
1.20
154215--154328
27
4.5
27
73
19
102
48
0
48
3
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
154260--154315
21
2.6
22
80
11
62
46
0
53
0
1.00
166193--166222
2
15.0
2
100
0
60
50
0
0
50
1.00
167941--167976
2
18.0
2
100
0
72
50
0
0
50
1.00
176645--176680
17
2.1
17
90
10
56
33
2
0
63
1.08
185853--185993
30
4.7
30
90
0
201
26
22
28
21
1.99
186051--186110
15
4.0
15
86
0
93
43
30
25
1
1.64
192618--192896
137
2.0
137
100
0
558
21
16
16
46
1.84
203010--203061
19
2.8
19
85
5
63
90
0
5
3
0.55
203010--203051
1
42.0
1
95
0
66
95
0
0
4
0.28
204727--204959
117
2.0
117
93
1
396
38
11
15
34
1.84
210040--210124
34
2.4
36
81
11
97
34
8
3
54
1.48
210670--210729
31
1.9
31
86
0
84
31
15
25
28
1.95
220985--221057
36
2.0
36
100
0
146
30
20
13
35
1.91
223180--223217
2
19.0
2
100
0
76
50
0
0
50
1.00
226822--226903
30
2.7
30
83
12
105
36
10
25
26
1.89
227005--227155
27
5.5
27
81
4
167
32
21
13
31
1.93
227118--227188
36
2.0
36
94
0
124
40
22
7
29
1.80
227185--227395
113
1.9
110
86
4
298
26
16
21
36
1.94
227392--230001
655
4.0
655
89
3
3559
34
15
14
36
1.87
227391--230014
333
8.0
332
86
4
3410
33
15
14
36
1.87
227392--230014
988
2.7
974
86
4
3607
33
15
14
36
1.87

Tables:   1

The End!