Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014560.1 Corchorus capsularis cultivar CVL-1 contig14581, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78442
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:990 original size:45 final size:46
Alignment explanation
Indices: 918--1047 Score: 210
Period size: 45 Copynumber: 2.9 Consensus size: 46
908 ACCTCCGCAG
* *
918 GAGGCGAGGCCAGCAGACACGAAGGTACACGAGAAGACAGC-AAGT
1 GAGGCGAGGCCAGAAGACACGAGGGTACACGAGAAGACAGCGAAGT
*
963 GAGGCGAGGCCAGAAGACGCGAGGGTACACGAGAAGACA-CGAAGT
1 GAGGCGAGGCCAGAAGACACGAGGGTACACGAGAAGACAGCGAAGT
*
1008 GAAGCGAGGCCAGAAGACACGAGGGTACACGAGAAGACAG
1 GAGGCGAGGCCAGAAGACACGAGGGTACACGAGAAGACAG
1048 AGGCCTCCGC
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
44 1 0.01
45 77 0.99
ACGTcount: A:0.38, C:0.21, G:0.38, T:0.04
Consensus pattern (46 bp):
GAGGCGAGGCCAGAAGACACGAGGGTACACGAGAAGACAGCGAAGT
Found at i:1044 original size:20 final size:20
Alignment explanation
Indices: 974--1050 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 20
964 AGGCGAGGCC
*
974 AGAAGACGCGAGGGTACACG
1 AGAAGACACGAGGGTACACG
* * *
994 AGAAGACACGAAGTGAAGCGAGGCC
1 AGAAGACACG-AGGGTA-C-A--CG
1019 AGAAGACACGAGGGTACACG
1 AGAAGACACGAGGGTACACG
1039 AGAAGACA-GAGG
1 AGAAGACACGAGG
1051 CCTCCGCAGG
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
19 4 0.09
20 18 0.40
21 4 0.09
22 2 0.04
23 2 0.04
24 4 0.09
25 11 0.24
ACGTcount: A:0.40, C:0.18, G:0.38, T:0.04
Consensus pattern (20 bp):
AGAAGACACGAGGGTACACG
Found at i:1095 original size:52 final size:52
Alignment explanation
Indices: 1011--1202 Score: 323
Period size: 52 Copynumber: 3.7 Consensus size: 52
1001 ACGAAGTGAA
**
1011 GCGAGGCCAGAAG-ACACGAGGGTACACGAGAAGACAGAGGCCTCCGCAGGAG
1 GCGAGGCCAG-AGCACACGAGGGCGCACGAGAAGACAGAGGCCTCCGCAGGAG
* *
1063 GCGAGGCCAGCGCACACGAGGGCGCACAAGAAGACAGAGGCCTCCGCAGGAG
1 GCGAGGCCAGAGCACACGAGGGCGCACGAGAAGACAGAGGCCTCCGCAGGAG
1115 GCGAGGCCAGAGCACACGAGGGCGCACGAGAAGACAGAGGCCTCCGCAGGAG
1 GCGAGGCCAGAGCACACGAGGGCGCACGAGAAGACAGAGGCCTCCGCAGGAG
*
1167 GCGAGGCCAGCGCACACGAGGGCGCACGAGAAGACA
1 GCGAGGCCAGAGCACACGAGGGCGCACGAGAAGACA
1203 CACACGAAGG
Statistics
Matches: 132, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
51 1 0.01
52 131 0.99
ACGTcount: A:0.30, C:0.29, G:0.39, T:0.02
Consensus pattern (52 bp):
GCGAGGCCAGAGCACACGAGGGCGCACGAGAAGACAGAGGCCTCCGCAGGAG
Found at i:1207 original size:24 final size:24
Alignment explanation
Indices: 1179--1252 Score: 85
Period size: 24 Copynumber: 3.1 Consensus size: 24
1169 GAGGCCAGCG
* *
1179 CACACGAGGGCGCACGAGAAGACA
1 CACACGAAGGCACACGAGAAGACA
*
1203 CACACGAAGGTACACGAGAAGACA
1 CACACGAAGGCACACGAGAAGACA
* * * *
1227 CACACAAAGGTACACAAGAAGCCA
1 CACACGAAGGCACACGAGAAGACA
1251 CA
1 CA
1253 GTGGTGCTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.45, C:0.28, G:0.24, T:0.03
Consensus pattern (24 bp):
CACACGAAGGCACACGAGAAGACA
Found at i:2161 original size:36 final size:39
Alignment explanation
Indices: 2110--2212 Score: 113
Period size: 45 Copynumber: 2.6 Consensus size: 39
2100 GAAAACGTGC
*
2110 AGGAGATCAAGGAGAGCTT-AGGA-T-CCAAATGCTTTA
1 AGGAGATCAAAGAGAGCTTCAGGATTGCCAAATGCTTTA
*
2146 AGGAGATCAAAGAGAGCTTTGGCTCCATGATTGCCAAATGCTTTA
1 AGGAGATCAAAGAGAGC--T---T-CAGGATTGCCAAATGCTTTA
2191 AGGAGATCAAAGAGAGCTTCAG
1 AGGAGATCAAAGAGAGCTTCAG
2213 CTCCATGACT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 16 0.29
38 1 0.02
39 2 0.04
40 1 0.02
41 1 0.02
43 4 0.07
44 1 0.02
45 29 0.53
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (39 bp):
AGGAGATCAAAGAGAGCTTCAGGATTGCCAAATGCTTTA
Found at i:2198 original size:45 final size:45
Alignment explanation
Indices: 2134--2225 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
2124 AGCTTAGGAT
** *
2134 CCAAATGCTTTAAGGAGATCAAAGAGAGCTTTGGCTCCATGATTG
1 CCAAATGCTTTAAGGAGATCAAAGAGAGCTTCAGCTCCATGACTG
2179 CCAAATGCTTTAAGGAGATCAAAGAGAGCTTCAGCTCCATGACTG
1 CCAAATGCTTTAAGGAGATCAAAGAGAGCTTCAGCTCCATGACTG
2224 CC
1 CC
2226 GAGTGCACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.24
Consensus pattern (45 bp):
CCAAATGCTTTAAGGAGATCAAAGAGAGCTTCAGCTCCATGACTG
Found at i:8302 original size:13 final size:13
Alignment explanation
Indices: 8284--8311 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8274 TACCAATCAC
8284 AAACGAAGCAGAA
1 AAACGAAGCAGAA
8297 AAACGAAGCAGAA
1 AAACGAAGCAGAA
8310 AA
1 AA
8312 CAACTTAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.14, G:0.21, T:0.00
Consensus pattern (13 bp):
AAACGAAGCAGAA
Found at i:9823 original size:30 final size:30
Alignment explanation
Indices: 9789--9847 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
9779 CCTTCTGGCC
9789 AAAAAAAAATTAAATTAACCTAGCAAAAAG
1 AAAAAAAAATTAAATTAACCTAGCAAAAAG
** *
9819 AAAAACGAATTAAATTAACCTCGCAAAAA
1 AAAAAAAAATTAAATTAACCTAGCAAAAA
9848 AATAAATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.63, C:0.14, G:0.07, T:0.17
Consensus pattern (30 bp):
AAAAAAAAATTAAATTAACCTAGCAAAAAG
Found at i:10352 original size:3 final size:3
Alignment explanation
Indices: 10344--10376 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
10334 CTTAATATGT
10344 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
10377 AGAAAGAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:10381 original size:4 final size:4
Alignment explanation
Indices: 10372--10397 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
10362 GAAGAAGAAG
10372 AAGA AAGA AAGA AAGA AAGA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAGA AA
10398 AAAAAAACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:11167 original size:28 final size:27
Alignment explanation
Indices: 11115--11169 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
11105 TTCATTATTA
* *
11115 TCAAATTAAAAAGTTCATCAGAGCTAC
1 TCAAATTAAAAAATTCATCAAAGCTAC
11142 TCAAATTAAAAAAATTCCA-CAAAGCTAC
1 TCAAATT-AAAAAATT-CATCAAAGCTAC
11170 CAGTACCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 7 0.29
28 15 0.62
29 2 0.08
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (27 bp):
TCAAATTAAAAAATTCATCAAAGCTAC
Found at i:18321 original size:30 final size:28
Alignment explanation
Indices: 18285--18341 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
18275 CATCATCGCC
18285 GCCGCCACTAGGGGGTGGGGGTGGGGGTGA
1 GCCGCCACTAGGGGGT--GGGTGGGGGTGA
*
18315 GCCGCCAGTAGGGGGTGGGTGGGGGTG
1 GCCGCCACTAGGGGGTGGGTGGGGGTG
18342 GGGGTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 11 0.42
30 15 0.58
ACGTcount: A:0.09, C:0.16, G:0.61, T:0.14
Consensus pattern (28 bp):
GCCGCCACTAGGGGGTGGGTGGGGGTGA
Found at i:19492 original size:65 final size:65
Alignment explanation
Indices: 19374--19502 Score: 199
Period size: 65 Copynumber: 2.0 Consensus size: 65
19364 AAGGATTGTG
*
19374 ACGTTTTCTCTAACTCCTTTGTTCTTATTAGGCTGCAGTTACTGTTTTCTCATTTCTGCATTTTG
1 ACGTTTTCTCTAACTCCTTTGTTCTTATCAGGCT-CAGTTACTGTTTTCTCATTTCTGCATTTTG
19439 C
65 C
*
19440 ACGTTTTCTCTAAAACTCCTTTGTTCTTATCAGG-T-TGTTACTGTTTTCTCATTTCTGCATTTT
1 ACGTTTTCTCT--AACTCCTTTGTTCTTATCAGGCTCAGTTACTGTTTTCTCATTTCTGCATTTT
19503 AATTGCTTGC
Statistics
Matches: 59, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
65 27 0.46
66 11 0.19
67 1 0.02
68 20 0.34
ACGTcount: A:0.15, C:0.22, G:0.12, T:0.51
Consensus pattern (65 bp):
ACGTTTTCTCTAACTCCTTTGTTCTTATCAGGCTCAGTTACTGTTTTCTCATTTCTGCATTTTGC
Found at i:21733 original size:19 final size:19
Alignment explanation
Indices: 21704--21748 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
21694 AACATATGGT
21704 ATCATTAGAGTTCTTATATA
1 ATCA-TAGAGTTCTTATATA
21724 ATCATAGAGTTCTTATATA
1 ATCATAGAGTTCTTATATA
21743 ACTCAT
1 A-TCAT
21749 GGAAGATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (19 bp):
ATCATAGAGTTCTTATATA
Found at i:23645 original size:13 final size:13
Alignment explanation
Indices: 23627--23651 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23617 TCCTGTGTCC
23627 ATGGGGAGAACAA
1 ATGGGGAGAACAA
23640 ATGGGGAGAACA
1 ATGGGGAGAACA
23652 TTCATCTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.40, T:0.08
Consensus pattern (13 bp):
ATGGGGAGAACAA
Found at i:25712 original size:16 final size:16
Alignment explanation
Indices: 25691--25725 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
25681 TTTTTTATTT
* *
25691 TATTTATTAATTTATA
1 TATTTATGAATTAATA
25707 TATTTATGAATTAATA
1 TATTTATGAATTAATA
25723 TAT
1 TAT
25726 ATTTTAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TATTTATGAATTAATA
Found at i:28793 original size:21 final size:21
Alignment explanation
Indices: 28737--28821 Score: 100
Period size: 21 Copynumber: 4.1 Consensus size: 21
28727 ACCACTGTCG
28737 CCGCCACTAGGGGGTGAGCCA
1 CCGCCACTAGGGGGTGAGCCA
* * * *
28758 CCTCCTCCA-GGGGTGAGCCG
1 CCGCCACTAGGGGGTGAGCCA
*
28778 CCGCCACTAGGGGGTGATCCA
1 CCGCCACTAGGGGGTGAGCCA
* *
28799 CCGCCGCTGGGGGGTGAGCCA
1 CCGCCACTAGGGGGTGAGCCA
28820 CC
1 CC
28822 ACATTGGCTC
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
20 16 0.31
21 35 0.69
ACGTcount: A:0.14, C:0.36, G:0.38, T:0.12
Consensus pattern (21 bp):
CCGCCACTAGGGGGTGAGCCA
Found at i:49450 original size:26 final size:27
Alignment explanation
Indices: 49414--49469 Score: 105
Period size: 26 Copynumber: 2.1 Consensus size: 27
49404 CTGAAAACAA
49414 ATAATGTTTTCAATTTCATCCAAAATC
1 ATAATGTTTTCAATTTCATCCAAAATC
49441 ATAATG-TTTCAATTTCATCCAAAATC
1 ATAATGTTTTCAATTTCATCCAAAATC
49467 ATA
1 ATA
49470 GTTCTTGTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.39, C:0.18, G:0.04, T:0.39
Consensus pattern (27 bp):
ATAATGTTTTCAATTTCATCCAAAATC
Found at i:58732 original size:120 final size:120
Alignment explanation
Indices: 58511--58740 Score: 363
Period size: 120 Copynumber: 1.9 Consensus size: 120
58501 AAGTATTTGG
* * * * *
58511 TATTAATTAAATGGTTGATGCATGATCATTTGTCGAAAGGAAGGGTCGAATCGAATTCCTCCTCT
1 TATTAATTAAATGATTAATGCATGATCATTTATCGAAAGAAAGGGTCGAACCGAATTCCTCCTCT
* *
58576 CAATGAGATGGTTAGAGGTTAGAATTCATTCAATGAAGGTCTCGACTCTCGAGTT
66 CAATGAGATGGTTAGAGGTTAGAATTCACTCAATGAAGATCTCGACTCTCGAGTT
*
58631 TATTAATTAAATGATTAATGCATGATCATTTATCGAAAGAAAGGGTTGAACCGAATTCCTCCTCT
1 TATTAATTAAATGATTAATGCATGATCATTTATCGAAAGAAAGGGTCGAACCGAATTCCTCCTCT
*
58696 CAATGAGATGGTTAGAGGTTAGAATTCAC-CTGATGAAGATCTCGA
66 CAATGAGATGGTTAGAGGTTAGAATTCACTC-AATGAAGATCTCGA
58741 GTTTGAGTAT
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
119 1 0.01
120 99 0.99
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (120 bp):
TATTAATTAAATGATTAATGCATGATCATTTATCGAAAGAAAGGGTCGAACCGAATTCCTCCTCT
CAATGAGATGGTTAGAGGTTAGAATTCACTCAATGAAGATCTCGACTCTCGAGTT
Found at i:58794 original size:15 final size:15
Alignment explanation
Indices: 58774--58804 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
58764 TTACAAGTGT
58774 ATTGATGTAATAAAC
1 ATTGATGTAATAAAC
58789 ATTGATGTAATAAAC
1 ATTGATGTAATAAAC
58804 A
1 A
58805 AAAAAGAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.13, T:0.32
Consensus pattern (15 bp):
ATTGATGTAATAAAC
Found at i:69995 original size:6 final size:6
Alignment explanation
Indices: 69984--70024 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
69974 AATTTTGTTT
*
69984 CCTTTC CCTTTC CCTTTC CCTTTC CCTTTC CCTTTC GCTTT
1 CCTTTC CCTTTC CCTTTC CCTTTC CCTTTC CCTTTC CCTTT
70025 GATTTTCCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.46, G:0.02, T:0.51
Consensus pattern (6 bp):
CCTTTC
Found at i:72201 original size:20 final size:20
Alignment explanation
Indices: 72162--72202 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
72152 AGTATTTCAA
* **
72162 TTTCTTGATTGGCCTTTTTT
1 TTTCTTAATTGGCCACTTTT
72182 TTTCTTAATTGGCCACTTTT
1 TTTCTTAATTGGCCACTTTT
72202 T
1 T
72203 CTAGGGTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.17, G:0.12, T:0.61
Consensus pattern (20 bp):
TTTCTTAATTGGCCACTTTT
Found at i:74037 original size:12 final size:12
Alignment explanation
Indices: 74020--74057 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
74010 TTTTATTTTA
74020 TTTTTGTTTATT
1 TTTTTGTTTATT
*
74032 TTTTTGATATATT
1 TTTTTG-TTTATT
74045 TTTTTGTTTATT
1 TTTTTGTTTATT
74057 T
1 T
74058 AATGTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (12 bp):
TTTTTGTTTATT
Found at i:76309 original size:93 final size:93
Alignment explanation
Indices: 76150--76334 Score: 334
Period size: 93 Copynumber: 2.0 Consensus size: 93
76140 AGAAAGCAAA
76150 TCCATTAACAGGCATGCTACTATAAAGACTATTAAGGTTTGGAGAATTTCAACATTACTTCATAC
1 TCCATTAACAGGCATGCTACTATAAAGACTATTAAGGTTTGGAGAATTTCAACATTACTTCATAC
* *
76215 TGTATTACTGATGAGTTGCATATATATC
66 TGAATTACCGATGAGTTGCATATATATC
* *
76243 TCCATTAACAGGCATGCTACTATAAAGATTATTAGGGTTTGGAGAATTTCAACATTACTTCATAC
1 TCCATTAACAGGCATGCTACTATAAAGACTATTAAGGTTTGGAGAATTTCAACATTACTTCATAC
76308 TGAATTACCGATGAGTTGCATATATAT
66 TGAATTACCGATGAGTTGCATATATAT
76335 ATATATATAT
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 88 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Consensus pattern (93 bp):
TCCATTAACAGGCATGCTACTATAAAGACTATTAAGGTTTGGAGAATTTCAACATTACTTCATAC
TGAATTACCGATGAGTTGCATATATATC
Found at i:76731 original size:37 final size:37
Alignment explanation
Indices: 76681--76751 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
76671 GTCTACATAC
* *
76681 CTTTGATTTTCTATTATTTCCTTTTCTAAGATGTGAA
1 CTTTGATTTTCTATTATTTCCTTTCCTAAAATGTGAA
*
76718 CTTTGATTTTCTATTGTTTCCTTTCCTAAAATGT
1 CTTTGATTTTCTATTATTTCCTTTCCTAAAATGT
76752 AATTTATAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.55
Consensus pattern (37 bp):
CTTTGATTTTCTATTATTTCCTTTCCTAAAATGTGAA
Found at i:76887 original size:1 final size:1
Alignment explanation
Indices: 76881--76913 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
76871 AGTAATTGAC
76881 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
76914 AATGGAAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Done.