Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014565.1 Corchorus capsularis cultivar CVL-1 contig14586, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26553

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
168--209
19
2.3
18
84
8
57
61
0
4
33
1.17
173--209
19
2.0
19
89
5
58
64
0
2
32
1.07
381--425
15
2.9
15
83
6
54
33
0
13
53
1.40
709--736
14
2.0
14
100
0
56
42
14
7
35
1.73
4555--4767
69
3.0
69
68
16
202
36
19
12
31
1.90
4740--5039
150
2.0
150
98
0
582
38
20
10
31
1.85
5107--5158
8
6.8
8
86
8
81
11
61
0
26
1.30
5107--5151
14
3.1
14
90
6
63
11
62
0
26
1.29
5117--5158
22
1.9
22
100
0
84
11
59
0
28
1.33
5260--5309
16
3.1
16
94
0
82
20
50
0
30
1.49
5413--5474
30
2.1
30
93
0
106
24
37
1
37
1.65
5457--5492
16
2.2
16
100
0
72
16
55
0
27
1.42
5609--5641
16
2.1
16
100
0
66
18
57
0
24
1.40
5369--5644
149
1.9
143
88
4
417
23
34
11
30
1.90
5619--5668
24
2.1
24
100
0
100
16
56
4
24
1.57
5410--5807
172
2.3
175
94
3
685
22
34
10
32
1.88
5896--5999
55
1.9
55
93
0
181
21
28
13
36
1.91
6505--6540
16
2.2
16
100
0
72
66
5
0
27
1.13
6502--6542
16
2.7
15
89
10
66
63
4
0
31
1.15
11193--11583
178
2.2
177
80
6
405
34
14
15
35
1.88
12330--12362
17
1.9
17
100
0
66
57
0
6
36
1.23
12984--13035
2
25.0
2
84
7
68
51
0
3
44
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14028--14140
57
2.0
57
92
0
190
35
15
29
20
1.93
14637--14681
22
2.0
22
100
0
90
42
22
13
22
1.88
14708--14759
26
2.0
26
96
0
95
44
28
7
19
1.78
14711--14769
26
2.4
25
85
5
75
47
30
5
16
1.69
14760--14900
70
2.0
70
95
0
255
38
21
13
26
1.90
15041--15086
23
2.0
23
100
0
92
21
17
30
30
1.96
15076--15221
75
1.9
75
88
0
220
30
20
17
30
1.96
17295--17327
2
16.5
2
93
0
57
51
3
0
45
1.16
19806--19844
21
1.9
21
89
5
62
20
30
10
38
1.86
20076--20129
22
2.4
23
81
9
67
33
1
7
57
1.37
22682--22746
31
2.1
31
100
0
130
20
15
23
41
1.89

Tables:   1

The End!