Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014567.1 Corchorus capsularis cultivar CVL-1 contig14588, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43251

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3425--3499
16
4.7
16
80
6
89
36
40
17
6
1.76
3425--3515
32
2.8
32
86
0
110
35
40
18
5
1.74
3425--3517
48
1.9
48
82
8
118
35
39
19
5
1.74
3425--3517
16
5.8
16
75
9
73
35
39
19
5
1.74
4272--4311
9
4.7
9
77
22
50
42
37
12
7
1.71
4272--4331
16
4.3
15
76
22
67
40
38
13
8
1.75
4272--4327
25
2.2
26
90
6
89
42
35
12
8
1.74
15039--15239
68
3.0
65
82
7
233
34
14
8
42
1.77
20294--20320
7
3.9
7
100
0
54
14
44
11
29
1.80
23692--23728
2
19.0
2
94
5
67
48
0
0
51
1.00
29514--29553
17
2.4
17
95
0
71
55
12
12
20
1.69
31077--31213
72
1.9
72
90
3
222
41
24
8
24
1.83
37561--37591
15
2.1
15
93
0
53
35
29
3
32
1.73
40739--40804
33
2.0
33
85
5
89
48
9
3
39
1.50
40803--40940
51
2.7
51
84
3
181
41
14
3
40
1.63
40725--40997
49
5.3
50
75
13
207
41
14
2
41
1.61

Tables:   1

The End!