Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014568.1 Corchorus capsularis cultivar CVL-1 contig14589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72670

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1092--1165
35
2.1
35
100
0
148
22
21
18
36
1.95
1197--1651
197
2.3
197
86
4
634
35
18
12
33
1.88
3861--3952
35
2.6
35
87
0
139
30
9
26
33
1.88
4840--4879
20
2.1
19
95
4
71
5
10
12
72
1.26
16257--16314
5
12.0
5
81
18
70
0
0
18
81
0.70
16257--16314
19
3.0
19
83
16
75
0
0
18
81
0.70
18517--20870
325
7.4
322
89
3
3567
32
15
17
34
1.91
20870--21688
309
2.6
312
83
7
1039
33
15
16
34
1.91
22295--23391
56
19.3
56
76
14
931
34
22
15
27
1.95
22509--23391
82
10.5
81
81
10
844
34
22
15
27
1.94
22867--22953
42
2.1
42
95
0
156
37
18
17
26
1.92
22897--22923
12
2.2
12
100
0
54
40
18
14
25
1.89
22909--23391
26
17.5
27
85
6
509
34
21
15
28
1.94
23492--23568
34
2.3
33
82
6
93
38
14
24
22
1.91
27869--27893
2
12.5
2
100
0
50
52
0
48
0
1.00
27844--27883
19
2.1
19
86
13
55
57
2
40
0
1.12
30261--30511
51
5.1
51
85
5
329
37
17
16
29
1.91
30261--30511
101
2.5
100
85
5
343
37
17
16
29
1.91
34987--35034
21
2.2
22
85
3
62
31
8
25
35
1.85
34994--35034
21
1.9
21
90
5
64
24
9
24
41
1.85
58240--58276
2
19.0
2
94
5
67
48
0
0
51
1.00
68376--68456
9
8.9
9
71
20
62
0
34
3
61
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68378--68438
21
3.0
20
79
13
72
0
32
1
65
1.02
70427--70453
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!