genome.fa.s14570.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014570.1 Corchorus capsularis cultivar CVL-1 contig14591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96995

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701--738	17	2.2	17	90	0	58	50	5	0	44	1.24
1878--1921	7	6.4	7	92	2	72	25	15	27	31	1.96
6567--6591	12	2.1	12	100	0	50	40	24	24	12	1.88
7042--7076	6	5.8	6	100	0	70	0	34	0	65	0.93
11667--11693	14	1.9	14	100	0	54	29	18	14	37	1.91
22755--22779	13	1.9	13	100	0	50	52	8	0	40	1.31
36355--36416	31	2.0	31	87	0	88	17	17	22	41	1.90
37060--37085	2	13.0	2	100	0	52	50	0	0	50	1.00
52347--52371	6	4.2	6	100	0	50	48	0	20	32	1.50
61275--61340	28	2.4	28	82	9	82	36	16	21	25	1.94
82753--82879	21	6.0	21	75	6	87	20	39	15	24	1.91
82753--82876	42	3.0	41	78	4	106	20	37	16	25	1.93
82779--82885	21	5.1	21	79	2	90	20	39	15	24	1.92
82854--82897	21	2.1	21	82	0	52	25	43	13	18	1.86
82971--83044	21	3.5	21	90	3	105	28	40	12	18	1.87
82992--83092	21	4.8	21	80	2	96	25	41	10	21	1.86
82965--83089	42	3.0	41	79	5	126	25	41	11	21	1.86
82971--83098	21	6.1	21	82	0	85	25	42	11	20	1.86
83061--83176	42	2.8	42	82	5	128	26	39	9	24	1.86
83067--83176	21	5.2	21	77	8	100	26	41	9	22	1.83
83122--83288	63	2.6	62	74	3	163	23	44	7	24	1.78
83122--83254	42	3.2	41	76	6	124	25	43	7	23	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83157--83254	21	4.7	21	76	0	88	25	43	7	23	1.79
83227--83289	21	3.0	21	78	0	72	20	42	9	26	1.83
83307--83384	21	3.7	21	72	8	70	28	32	15	24	1.95
83295--83383	42	2.1	42	83	8	110	29	33	13	23	1.93
83623--83663	21	2.0	21	85	0	55	26	39	2	31	1.70
87123--87150	6	4.7	6	100	0	56	17	17	0	64	1.30

Tables:   1

The End!