Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014577.1 Corchorus capsularis cultivar CVL-1 contig14598, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16600

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1379--1433
27
2.0
27
96
0
101
30
25
16
27
1.96
1860--1894
4
8.8
4
93
0
61
25
2
22
48
1.64
3657--3691
12
2.9
12
86
0
52
28
37
22
11
1.89
3794--3871
27
2.9
27
96
0
147
30
23
17
28
1.97
4341--4372
2
16.0
2
100
0
64
50
0
0
50
1.00
4585--4611
13
2.1
13
100
0
54
55
14
14
14
1.70
5271--5338
26
2.6
26
88
0
91
17
20
26
35
1.95
5399--5429
7
4.3
7
95
4
53
87
0
12
0
0.55
9566--9607
21
2.0
21
86
9
59
11
0
33
54
1.37
9604--9655
25
2.1
25
96
0
95
38
19
28
13
1.89
9693--9857
31
5.5
31
72
16
166
33
20
20
26
1.97
9728--9828
29
3.4
29
73
17
91
32
20
19
26
1.97
9697--9857
60
2.7
61
96
1
290
34
20
19
25
1.96
10331--10420
45
2.0
45
100
0
180
44
11
13
31
1.78
10964--11002
2
20.0
2
85
15
55
48
2
0
48
1.15
10788--11137
180
1.9
180
100
0
700
31
21
10
37
1.86
13028--13138
45
2.5
45
92
2
179
31
6
10
51
1.62
13187--13226
2
20.0
2
84
0
53
47
2
5
45
1.38
15310--15346
18
2.1
18
94
0
65
43
18
16
21
1.88
16029--16062
15
2.3
15
89
0
50
14
14
35
35
1.87

Tables:   1

The End!