Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001458.1 Corchorus capsularis cultivar CVL-1 contig01458, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4579
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36


Found at i:1020 original size:19 final size:19

Alignment explanation


    Indices: 996--1034  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        986 GATATACCAG

                               
        996 TATCCAAAGGCAGAATAAA
          1 TATCCAAAGGCAGAATAAA

                               
       1015 TATCCAAAGGCAGAATAAA
          1 TATCCAAAGGCAGAATAAA

             
       1034 T
          1 T

       1035 TTTTGAATCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.51, C:0.15, G:0.15, T:0.18


Consensus pattern (19 bp):   
TATCCAAAGGCAGAATAAA
Done.