Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001459.1 Corchorus capsularis cultivar CVL-1 contig01459, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 756

Length: 1260
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:55 original size:3 final size:3

Alignment explanation


    Indices: 49--76  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

         39 TTTTGTATAT

                                                 
         49 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T

         77 ATTTTAAAAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTA

Done.