Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000146.1 Corchorus capsularis cultivar CVL-1 contig00146, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1091
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22


Found at i:511 original size:16 final size:16

Alignment explanation


    Indices: 490--520  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        480 TCAATAATCA

                     *      
        490 AAACAAAATTAAGTTG
          1 AAACAAAATGAAGTTG

                           
        506 AAACAAAATGAAGTT
          1 AAACAAAATGAAGTT

        521 AGTATTAAAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.58, C:0.06, G:0.13, T:0.23


Consensus pattern (16 bp):   
AAACAAAATGAAGTTG
Done.