Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014605.1 Corchorus capsularis cultivar CVL-1 contig14626, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10646
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:6115 original size:22 final size:22

Alignment explanation


    Indices: 6087--6132  Score: 58
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       6077 ATAATCTGGA

                         *         
       6087 TTGCT-AATCACCGCCCCCCTTT
          1 TTGCTAAAT-ACCACCCCCCTTT

                              *   
       6109 TTGCTAAATACCACCCCCGTTT
          1 TTGCTAAATACCACCCCCCTTT

              
       6131 TT
          1 TT

       6133 ACACTTTTGC


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  22   18  0.86
  23    3  0.14

ACGTcount: A:0.17, C:0.39, G:0.09, T:0.35


Consensus pattern (22 bp):   
TTGCTAAATACCACCCCCCTTT

Found at i:6448 original size:22 final size:23

Alignment explanation


    Indices: 6409--6462  Score: 74
    Period size: 22  Copynumber: 2.4  Consensus size: 23

       6399 AAATTAATTT

                  *                
       6409 TTAATTAATTAGTATTTAATTAC
          1 TTAATTTATTAGTATTTAATTAC

               *                  *
       6432 TTAGTTTATTAGT-TTTAATTAG
          1 TTAATTTATTAGTATTTAATTAC

                     
       6454 TTAATTTAT
          1 TTAATTTAT

       6463 GATTAACTAC


Statistics
Matches: 27,  Mismatches: 4, Indels: 1
        0.84            0.12        0.03

Matches are distributed among these distances:
  22   16  0.59
  23   11  0.41

ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57


Consensus pattern (23 bp):   
TTAATTTATTAGTATTTAATTAC
Done.