Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014610.1 Corchorus capsularis cultivar CVL-1 contig14631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7027
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:5326 original size:27 final size:27

Alignment explanation


    Indices: 5274--5348  Score: 105
    Period size: 27  Copynumber: 2.7  Consensus size: 27

       5264 TAGACTTGAG

                              ** *     *
       5274 ATGACCAAAATGCCCCCTAAATGTGCAC
          1 ATGACCAAAATG-CCCCTGGACGTGCAA

                                       
       5302 ATGACCAAAATGCCCCTGGACGTGCAA
          1 ATGACCAAAATGCCCCTGGACGTGCAA

                                
       5329 ATGACCAAAATGCCCCTGGA
          1 ATGACCAAAATGCCCCTGGA

       5349 TGACCCTGAT


Statistics
Matches: 43,  Mismatches: 4, Indels: 1
        0.90            0.08        0.02

Matches are distributed among these distances:
  27   31  0.72
  28   12  0.28

ACGTcount: A:0.35, C:0.31, G:0.19, T:0.16


Consensus pattern (27 bp):   
ATGACCAAAATGCCCCTGGACGTGCAA
Done.