Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014612.1 Corchorus capsularis cultivar CVL-1 contig14633, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19978

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
769--979
26
8.0
26
79
11
232
55
7
20
16
1.65
773--981
53
3.9
53
91
3
330
55
7
20
16
1.65
1059--1148
37
2.5
36
85
7
121
55
2
23
18
1.54
1159--1222
26
2.5
25
80
14
69
60
1
21
15
1.43
1160--1274
40
2.8
39
81
7
115
57
4
20
18
1.57
1159--1290
14
9.7
13
68
16
63
59
3
19
17
1.53
1246--1293
15
3.2
15
75
0
51
62
4
16
16
1.48
1209--1286
20
3.7
21
79
8
95
58
5
16
19
1.56
1305--1346
21
2.0
21
85
0
57
52
2
19
26
1.58
1338--1384
20
2.3
21
85
10
71
53
8
19
19
1.70
1502--1585
39
2.2
37
83
8
107
58
2
25
14
1.48
1502--1672
65
2.6
64
83
6
193
56
2
24
16
1.54
1612--1695
27
3.2
26
76
6
96
53
2
25
19
1.57
1718--1777
27
2.2
26
88
5
84
51
5
21
21
1.66
12955--13013
30
2.0
30
82
0
73
18
15
23
42
1.88
14285--14337
23
2.2
24
90
3
81
62
0
1
35
1.06
15105--15151
21
2.2
21
92
0
76
21
19
8
51
1.73
18643--18689
24
2.0
24
91
0
76
40
23
21
14
1.90
19244--19293
26
2.0
25
92
4
82
22
20
4
54
1.61
19243--19308
26
2.5
25
79
13
71
22
19
3
54
1.58

Tables:   1

The End!