Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014613.1 Corchorus capsularis cultivar CVL-1 contig14634, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3672
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29


Found at i:432 original size:21 final size:22

Alignment explanation


    Indices: 396--441  Score: 67
    Period size: 21  Copynumber: 2.1  Consensus size: 22

        386 TTTAAATTTG

                     *            
        396 CTGTCAGAATTATGTTTAATGA
          1 CTGTCAGAACTATGTTTAATGA

                                * 
        418 CTGTCAG-ACTATGTTTAATTA
          1 CTGTCAGAACTATGTTTAATGA

               
        439 CTG
          1 CTG

        442 CTTTAATCTA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  21   15  0.68
  22    7  0.32

ACGTcount: A:0.28, C:0.13, G:0.17, T:0.41


Consensus pattern (22 bp):   
CTGTCAGAACTATGTTTAATGA
Done.