Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014614.1 Corchorus capsularis cultivar CVL-1 contig14635, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7028
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29


Found at i:1042 original size:21 final size:22

Alignment explanation


    Indices: 1006--1046  Score: 66
    Period size: 21  Copynumber: 1.9  Consensus size: 22

        996 TTTAAATTTG

                     *            
       1006 CTGTCAGAATTATGTTTAATGA
          1 CTGTCAGAACTATGTTTAATGA

                                
       1028 CTGTCA-AACTATGTTTAAT
          1 CTGTCAGAACTATGTTTAAT

       1047 TACTACTTTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   12  0.67
  22    6  0.33

ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41


Consensus pattern (22 bp):   
CTGTCAGAACTATGTTTAATGA
Done.