Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001462.1 Corchorus capsularis cultivar CVL-1 contig01462, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 736

Length: 1227
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30


Found at i:1168 original size:69 final size:69

Alignment explanation


    Indices: 1084--1222  Score: 206
    Period size: 69  Copynumber: 2.0  Consensus size: 69

       1074 AAGACCACCC

                 *            *   *                          *   **          
       1084 TGGATCAACTGGAAACAATTGATGAAAAACCGCCCTGGGTCGACTGAATTGATCGTTCTGACATA
          1 TGGATAAACTGGAAACAACTGAAGAAAAACCGCCCTGGGTCGACTGAATCGATAATTCTGACATA

                
       1149 AACT
         66 AACT

                      *                *                                     
       1153 TGGATAAACTTGAAACAACTGAAGAAAGACCGCCCTGGGTCGACTGAATCGATAATTCTGACATA
          1 TGGATAAACTGGAAACAACTGAAGAAAAACCGCCCTGGGTCGACTGAATCGATAATTCTGACATA

                
       1218 AACT
         66 AACT

             
       1222 T
          1 T

       1223 CGAAT


Statistics
Matches: 62,  Mismatches: 8, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  69   62  1.00

ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24


Consensus pattern (69 bp):   
TGGATAAACTGGAAACAACTGAAGAAAAACCGCCCTGGGTCGACTGAATCGATAATTCTGACATA
AACT
Done.