Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014625.1 Corchorus capsularis cultivar CVL-1 contig14646, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112045

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3252--3349
22
4.5
22
80
0
106
34
10
18
36
1.85
3354--3812
22
20.7
22
69
14
183
35
8
16
38
1.80
3253--3448
102
1.9
101
82
3
241
35
9
17
37
1.83
3376--3812
66
6.6
64
70
13
219
36
8
16
38
1.80
3647--3786
47
3.1
45
80
10
142
37
8
15
37
1.78
7568--7601
3
11.0
3
93
6
59
35
0
0
64
0.94
7706--7746
20
2.0
20
86
9
57
17
4
21
56
1.60
12238--12269
16
2.0
16
100
0
64
0
25
25
50
1.50
19857--19882
8
3.2
8
100
0
52
61
0
38
0
0.96
22324--22348
9
2.8
9
100
0
50
8
36
0
56
1.29
29001--29065
27
2.4
25
80
14
76
36
4
18
40
1.71
38487--38528
12
3.4
13
81
18
54
85
11
2
0
0.68
41911--41998
44
2.0
44
95
0
158
64
9
9
17
1.47
41267--42638
683
2.0
684
91
1
2239
36
15
17
30
1.91
50936--50995
29
2.1
29
87
6
86
20
18
5
56
1.59
52547--52686
70
2.0
70
100
0
280
37
17
12
32
1.87
57155--57228
37
2.0
37
100
0
148
35
27
0
37
1.57
70376--70415
2
20.0
2
89
0
62
45
0
0
55
0.99
76835--76884
25
1.9
26
88
8
75
22
6
20
52
1.68
80359--80389
16
1.9
16
100
0
62
41
0
12
45
1.42
81242--81279
1
38.0
1
100
0
76
100
0
0
0
0.00
84102--84134
17
2.0
17
88
5
50
30
6
24
39
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88387--88773
192
2.0
191
93
1
668
27
18
17
35
1.94
91375--91404
12
2.5
12
94
0
51
16
6
0
76
0.99
97010--97088
30
2.7
29
78
5
88
35
13
30
20
1.92
97827--97898
29
2.4
29
81
2
81
38
26
12
22
1.89
101419--101454
3
12.3
3
94
5
65
33
0
0
66
0.92
101423--101451
14
2.1
14
100
0
58
34
0
0
65
0.93
101420--101455
17
2.1
17
100
0
72
36
0
0
63
0.94
106970--106999
15
2.0
15
93
0
51
20
10
26
43
1.83

Tables:   1

The End!